AIMC Topic: Deep Learning

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Novel taxonomy-independent deep learning microbiome approach allows for accurate classification of different forensically relevant human epithelial materials.

Forensic science international. Genetics
Correct identification of different human epithelial materials such as from skin, saliva and vaginal origin is relevant in forensic casework as it provides crucial information for crime reconstruction. However, the overlap in human cell type composit...

A convolutional neural network algorithm for automatic segmentation of head and neck organs at risk using deep lifelong learning.

Medical physics
PURPOSE: This study suggests a lifelong learning-based convolutional neural network (LL-CNN) algorithm as a superior alternative to single-task learning approaches for automatic segmentation of head and neck (OARs) organs at risk.

DeepHistone: a deep learning approach to predicting histone modifications.

BMC genomics
MOTIVATION: Quantitative detection of histone modifications has emerged in the recent years as a major means for understanding such biological processes as chromosome packaging, transcriptional activation, and DNA damage. However, high-throughput exp...

MRCNN: a deep learning model for regression of genome-wide DNA methylation.

BMC genomics
BACKGROUND: Determination of genome-wide DNA methylation is significant for both basic research and drug development. As a key epigenetic modification, this biochemical process can modulate gene expression to influence the cell differentiation which ...

Clinical text classification with rule-based features and knowledge-guided convolutional neural networks.

BMC medical informatics and decision making
BACKGROUND: Clinical text classification is an fundamental problem in medical natural language processing. Existing studies have cocnventionally focused on rules or knowledge sources-based feature engineering, but only a limited number of studies hav...

Parsing clinical text using the state-of-the-art deep learning based parsers: a systematic comparison.

BMC medical informatics and decision making
BACKGROUND: A shareable repository of clinical notes is critical for advancing natural language processing (NLP) research, and therefore a goal of many NLP researchers is to create a shareable repository of clinical notes, that has breadth (from mult...

Predicting DNA Methylation States with Hybrid Information Based Deep-Learning Model.

IEEE/ACM transactions on computational biology and bioinformatics
DNA methylation plays an important role in the regulation of some biological processes. Up to now, with the development of machine learning models, there are several sequence-based deep learning models designed to predict DNA methylation states, whic...

Dynamic-DeepHit: A Deep Learning Approach for Dynamic Survival Analysis With Competing Risks Based on Longitudinal Data.

IEEE transactions on bio-medical engineering
Currently available risk prediction methods are limited in their ability to deal with complex, heterogeneous, and longitudinal data such as that available in primary care records, or in their ability to deal with multiple competing risks. This paper ...

Performing Multi-Target Regression via a Parameter Sharing-Based Deep Network.

International journal of neural systems
Multi-target regression (MTR) comprises the prediction of multiple continuous target variables from a common set of input variables. There are two major challenges when addressing the MTR problem: the exploration of the inter-target dependencies and ...

Artificial intelligence detection of distal radius fractures: a comparison between the convolutional neural network and professional assessments.

Acta orthopaedica
Background and purpose - Artificial intelligence has rapidly become a powerful method in image analysis with the use of convolutional neural networks (CNNs). We assessed the ability of a CNN, with a fast object detection algorithm previously identify...