AIMC Topic: Microscopy

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Classification of foodborne bacteria using hyperspectral microscope imaging technology coupled with convolutional neural networks.

Applied microbiology and biotechnology
Foodborne pathogens have become ongoing threats in the food industry, whereas their rapid detection and classification at an early stage are still challenging. To address early and rapid detection, hyperspectral microscope imaging (HMI) technology co...

Visual Servoed Robotic Mouse Oocyte Rotation.

IEEE transactions on bio-medical engineering
UNLABELLED: Both injection and biopsy of a mammalian cell require positioning and orientation of a biological cell in a three-dimensional space under a microscope. Manual cell manipulation and orientation is the most commonly used method that is base...

Deep learning enables pathologist-like scoring of NASH models.

Scientific reports
Non-alcoholic fatty liver disease (NAFLD) and the progressive form of non-alcoholic steatohepatitis (NASH) are diseases of major importance with a high unmet medical need. Efficacy studies on novel compounds to treat NAFLD/NASH using disease models a...

Epithelium segmentation and automated Gleason grading of prostate cancer via deep learning in label-free multiphoton microscopic images.

Journal of biophotonics
In the current clinical care practice, Gleason grading system is one of the most powerful prognostic predictors for prostate cancer (PCa). The grading system is based on the architectural pattern of cancerous epithelium in histological images. Howeve...

ImageDataExtractor: A Tool To Extract and Quantify Data from Microscopy Images.

Journal of chemical information and modeling
The rise of data science is leading to new paradigms in data-driven materials discovery. This carries an essential notion that large data sources containing chemical structure and property information can be mined in a fashion that detects and exploi...

Human peripheral blood leukocyte classification method based on convolutional neural network and data augmentation.

Medical physics
PURPOSE: Human peripheral blood leukocytes' classification is important for diagnosing blood diseases. Many microscopic leukocyte image automatic detection methods are proposed. In recent years, convolutional neural networks (CNNs) are applied to mic...

Attention-Based Deep Neural Networks for Detection of Cancerous and Precancerous Esophagus Tissue on Histopathological Slides.

JAMA network open
IMPORTANCE: Deep learning-based methods, such as the sliding window approach for cropped-image classification and heuristic aggregation for whole-slide inference, for analyzing histological patterns in high-resolution microscopy images have shown pro...

Urine Sediment Recognition Method Based on Multi-View Deep Residual Learning in Microscopic Image.

Journal of medical systems
Urine sediment recognition is attracting growing interest in the field of computer vision. A multi-view urine cell recognition method based on multi-view deep residual learning is proposed to solve some existing problems, such as multi-view cell gray...

Cell Type Classification and Unsupervised Morphological Phenotyping From Low-Resolution Images Using Deep Learning.

Scientific reports
Convolutional neural networks (ConvNets) have proven to be successful in both the classification and semantic segmentation of cell images. Here we establish a method for cell type classification utilizing images taken with a benchtop microscope direc...

Towards pixel-to-pixel deep nucleus detection in microscopy images.

BMC bioinformatics
BACKGROUND: Nucleus is a fundamental task in microscopy image analysis and supports many other quantitative studies such as object counting, segmentation, tracking, etc. Deep neural networks are emerging as a powerful tool for biomedical image comput...