AI Medical Compendium Topic:
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Automated machine learning optimizes and accelerates predictive modeling from COVID-19 high throughput datasets.

Scientific reports
COVID-19 outbreak brings intense pressure on healthcare systems, with an urgent demand for effective diagnostic, prognostic and therapeutic procedures. Here, we employed Automated Machine Learning (AutoML) to analyze three publicly available high thr...

Supervised Learning of Neural Networks for Active Queue Management in the Internet.

Sensors (Basel, Switzerland)
The paper examines the AQM mechanism based on neural networks. The active queue management allows packets to be dropped from the router's queue before the buffer is full. The aim of the work is to use machine learning to create a model that copies th...

Learning the Fastest RNA Folding Path Based on Reinforcement Learning and Monte Carlo Tree Search.

Molecules (Basel, Switzerland)
RNA molecules participate in many important biological processes, and they need to fold into well-defined secondary and tertiary structures to realize their functions. Like the well-known protein folding problem, there is also an RNA folding problem....

Development of in-house fully residual deep convolutional neural network-based segmentation software for the male pelvic CT.

Radiation oncology (London, England)
BACKGROUND: This study aimed to (1) develop a fully residual deep convolutional neural network (CNN)-based segmentation software for computed tomography image segmentation of the male pelvic region and (2) demonstrate its efficiency in the male pelvi...

Facial recognition accuracy in photographs of Thai neonates with Down syndrome among physicians and the Face2Gene application.

American journal of medical genetics. Part A
Down syndrome (DS) is typically recognizable in those who present with multiple dysmorphism, especially in regard to facial phenotypes. However, as the presentation of DS in neonates is less obvious, a phenotype-based presumptive diagnosis is more ch...

PHOTONAI-A Python API for rapid machine learning model development.

PloS one
PHOTONAI is a high-level Python API designed to simplify and accelerate machine learning model development. It functions as a unifying framework allowing the user to easily access and combine algorithms from different toolboxes into custom algorithm ...

Accurate plant pathogen effector protein classification ab initio with deepredeff: an ensemble of convolutional neural networks.

BMC bioinformatics
BACKGROUND: Plant pathogens cause billions of dollars of crop loss every year and are a major threat to global food security. Effector proteins are the tools such pathogens use to infect the cell, predicting effectors de novo from sequence is difficu...

PyRMD: A New Fully Automated AI-Powered Ligand-Based Virtual Screening Tool.

Journal of chemical information and modeling
Artificial intelligence (AI) algorithms are dramatically redefining the current drug discovery landscape by boosting the efficiency of its various steps. Still, their implementation often requires a certain level of expertise in AI paradigms and codi...

Prioritizing and characterizing functionally relevant genes across human tissues.

PLoS computational biology
Knowledge of genes that are critical to a tissue's function remains difficult to ascertain and presents a major bottleneck toward a mechanistic understanding of genotype-phenotype links. Here, we present the first machine learning model-FUGUE-combini...

DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data.

Genome medicine
Multi-omics data are good resources for prognosis and survival prediction; however, these are difficult to integrate computationally. We introduce DeepProg, a novel ensemble framework of deep-learning and machine-learning approaches that robustly pre...