AIMC Topic: Computational Biology

Clear Filters Showing 3141 to 3150 of 4583 articles

SNRFCB: sub-network based random forest classifier for predicting chemotherapy benefit on survival for cancer treatment.

Molecular bioSystems
Adjuvant chemotherapy (CTX) should be individualized to provide potential survival benefit and avoid potential harm to cancer patients. Our goal was to establish a computational approach for making personalized estimates of the survival benefit from ...

Integrative modeling of multi-omics data to identify cancer drivers and infer patient-specific gene activity.

BMC systems biology
BACKGROUND: High throughput technologies have been used to profile genes in multiple different dimensions, such as genetic variation, copy number, gene and protein expression, epigenetics, metabolomics. Computational analyses often treat these differ...

Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology.

Journal of biomedical informatics
Biomedical ontologies contain errors. Crowdsourcing, defined as taking a job traditionally performed by a designated agent and outsourcing it to an undefined large group of people, provides scalable access to humans. Therefore, the crowd has the pote...

A Comparative Analysis Between k-Mers and Community Detection-Based Features for the Task of Protein Classification.

IEEE transactions on nanobioscience
Machine learning algorithms are widely used to annotate biological sequences. Low-dimensional informative feature vectors can be crucial for the performance of the algorithms. In prior work, we have proposed the use of a community detection approach ...

A knowledgebase of the human Alu repetitive elements.

Journal of biomedical informatics
Alu elements are the most abundant retrotransposons in the human genome with more than one million copies. Alu repeats have been reported to participate in multiple processes related with genome regulation and compartmentalization. Moreover, they hav...

TensorFlow: Biology's Gateway to Deep Learning?

Cell systems
TensorFlow is Google's recently released open-source software for deep learning. What are its applications for computational biology?

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system.

Nucleic acids research
Numerous biological systems oscillate over time or space. Despite these oscillators' importance, data from an oscillatory system is problematic for existing methods of regularized supervised learning. We present ZeitZeiger, a method to predict a peri...

Detection of overlapping protein complexes in gene expression, phenotype and pathways of Saccharomyces cerevisiae using Prorank based Fuzzy algorithm.

Gene
Proteins show their functional activity by interacting with other proteins and forms protein complexes since it is playing an important role in cellular organization and function. To understand the higher order protein organization, overlapping is an...

Artificial intelligence and synthetic biology: A tri-temporal contribution.

Bio Systems
Artificial intelligence can make numerous contributions to synthetic biology. I would like to suggest three that are related to the past, present and future of artificial intelligence. From the past, works in biology and artificial systems by Turing ...