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g:Profiler-a web server for functional interpretation of gene lists (2016 update).

Nucleic acids research
Functional enrichment analysis is a key step in interpreting gene lists discovered in diverse high-throughput experiments. g:Profiler studies flat and ranked gene lists and finds statistically significant Gene Ontology terms, pathways and other gene ...

The Edge-Disjoint Path Problem on Random Graphs by Message-Passing.

PloS one
We present a message-passing algorithm to solve a series of edge-disjoint path problems on graphs based on the zero-temperature cavity equations. Edge-disjoint paths problems are important in the general context of routing, that can be defined by inc...

LedPred: an R/bioconductor package to predict regulatory sequences using support vector machines.

Bioinformatics (Oxford, England)
UNLABELLED: Supervised classification based on support vector machines (SVMs) has successfully been used for the prediction of cis-regulatory modules (CRMs). However, no integrated tool using such heterogeneous data as position-specific scoring matri...

Telerobotic Haptic Exploration in Art Galleries and Museums for Individuals with Visual Impairments.

IEEE transactions on haptics
This paper presents a haptic telepresence system that enables visually impaired users to explore locations with rich visual observation such as art galleries and museums by using a telepresence robot, a RGB-D sensor (color and depth camera), and a ha...

HemOnc.org: A Collaborative Online Knowledge Platform for Oncology Professionals.

Journal of oncology practice
PURPOSE: Cancer care involves extensive knowledge about numerous chemotherapy drugs and chemotherapy regimens. This information is constantly evolving, and there has been no freely available, comprehensive, centralized repository of chemotherapy info...

Secondary use of electronic health records for building cohort studies through top-down information extraction.

Journal of biomedical informatics
Controlled clinical trials are usually supported with an in-front data aggregation system, which supports the storage of relevant information according to the trial context within a highly structured environment. In contrast to the documentation of c...

DANN: a deep learning approach for annotating the pathogenicity of genetic variants.

Bioinformatics (Oxford, England)
UNLABELLED: Annotating genetic variants, especially non-coding variants, for the purpose of identifying pathogenic variants remains a challenge. Combined annotation-dependent depletion (CADD) is an algorithm designed to annotate both coding and non-c...

PFP/ESG: automated protein function prediction servers enhanced with Gene Ontology visualization tool.

Bioinformatics (Oxford, England)
UNLABELLED: Protein function prediction (PFP) is an automated function prediction method that predicts Gene Ontology (GO) annotations for a protein sequence using distantly related sequences and contextual associations of GO terms. Extended similarit...

A Spiking Neural Simulator Integrating Event-Driven and Time-Driven Computation Schemes Using Parallel CPU-GPU Co-Processing: A Case Study.

IEEE transactions on neural networks and learning systems
Time-driven simulation methods in traditional CPU architectures perform well and precisely when simulating small-scale spiking neural networks. Nevertheless, they still have drawbacks when simulating large-scale systems. Conversely, event-driven simu...