AIMC Topic: Computer Graphics

Clear Filters Showing 211 to 220 of 233 articles

Utilizing graph machine learning within drug discovery and development.

Briefings in bioinformatics
Graph machine learning (GML) is receiving growing interest within the pharmaceutical and biotechnology industries for its ability to model biomolecular structures, the functional relationships between them, and integrate multi-omic datasets - amongst...

Hyperbolic relational graph convolution networks plus: a simple but highly efficient QSAR-modeling method.

Briefings in bioinformatics
Accurate predictions of druggability and bioactivities of compounds are desirable to reduce the high cost and time of drug discovery. After more than five decades of continuing developments, quantitative structure-activity relationship (QSAR) methods...

Venn diagrams in bioinformatics.

Briefings in bioinformatics
Venn diagrams are widely used tools for graphical depiction of the unions, intersections and distinctions among multiple datasets, and a large number of programs have been developed to generate Venn diagrams for applications in various research areas...

GAERF: predicting lncRNA-disease associations by graph auto-encoder and random forest.

Briefings in bioinformatics
Predicting disease-related long non-coding RNAs (lncRNAs) is beneficial to finding of new biomarkers for prevention, diagnosis and treatment of complex human diseases. In this paper, we proposed a machine learning techniques-based classification appr...

GPS-Palm: a deep learning-based graphic presentation system for the prediction of S-palmitoylation sites in proteins.

Briefings in bioinformatics
As an important reversible lipid modification, S-palmitoylation mainly occurs at specific cysteine residues in proteins, participates in regulating various biological processes and is associated with human diseases. Besides experimental assays, compu...

MusiteDeep: a deep-learning based webserver for protein post-translational modification site prediction and visualization.

Nucleic acids research
MusiteDeep is an online resource providing a deep-learning framework for protein post-translational modification (PTM) site prediction and visualization. The predictor only uses protein sequences as input and no complex features are needed, which res...

Partial directed coherence based graph convolutional neural networks for driving fatigue detection.

The Review of scientific instruments
The mental state of a driver can be accurately and reliably evaluated by detecting the driver's electroencephalogram (EEG) signals. However, traditional machine learning and deep learning methods focus on the single electrode feature analysis and ign...

Graph kernels combined with the neural network on protein classification.

Journal of bioinformatics and computational biology
At present, most of the researches on protein classification are based on graph kernels. The essence of graph kernels is to extract the substructure and use the similarity of substructures as the kernel values. In this paper, we propose a novel graph...

YAMDA: thousandfold speedup of EM-based motif discovery using deep learning libraries and GPU.

Bioinformatics (Oxford, England)
MOTIVATION: Motif discovery in large biopolymer sequence datasets can be computationally demanding, presenting significant challenges for discovery in omics research. MEME, arguably one of the most popular motif discovery software, takes quadratic ti...