AIMC Topic: Datasets as Topic

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Graph- and rule-based learning algorithms: a comprehensive review of their applications for cancer type classification and prognosis using genomic data.

Briefings in bioinformatics
Cancer is well recognized as a complex disease with dysregulated molecular networks or modules. Graph- and rule-based analytics have been applied extensively for cancer classification as well as prognosis using large genomic and other data over the p...

Investigating the role of Simpson's paradox in the analysis of top-ranked features in high-dimensional bioinformatics datasets.

Briefings in bioinformatics
An important problem in bioinformatics consists of identifying the most important features (or predictors), among a large number of features in a given classification dataset. This problem is often addressed by using a machine learning-based feature ...

Application of Convolutional Neural Networks for Detection of Superficial Nonampullary Duodenal Epithelial Tumors in Esophagogastroduodenoscopic Images.

Clinical and translational gastroenterology
OBJECTIVES: A superficial nonampullary duodenal epithelial tumor (SNADET) is defined as a mucosal or submucosal sporadic tumor of the duodenum that does not arise from the papilla of Vater. SNADETs rarely metastasize to the lymph nodes, and most can ...

medExtractR: A targeted, customizable approach to medication extraction from electronic health records.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: We developed medExtractR, a natural language processing system to extract medication information from clinical notes. Using a targeted approach, medExtractR focuses on individual drugs to facilitate creation of medication-specific research...

Consumer health information and question answering: helping consumers find answers to their health-related information needs.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Consumers increasingly turn to the internet in search of health-related information; and they want their questions answered with short and precise passages, rather than needing to analyze lists of relevant documents returned by search engi...

Using Machine Learning and Structural Neuroimaging to Detect First Episode Psychosis: Reconsidering the Evidence.

Schizophrenia bulletin
Despite the high level of interest in the use of machine learning (ML) and neuroimaging to detect psychosis at the individual level, the reliability of the findings is unclear due to potential methodological issues that may have inflated the existing...

VacPred: Sequence-based prediction of plant vacuole proteins using machine-learning techniques.

Journal of biosciences
Subcellular localization prediction of the proteome is one of major goals of large-scale genome or proteome sequencing projects to define the gene functions that could be possible with the help of computational modeling techniques. Previously, differ...

ES-MDA: Enhanced Similarity-based MiRNA-Disease Association.

Current protein & peptide science
Accumulating evidence demonstrate that miRNAs can be treated as critical biomarkers in various complex human diseases. Thus, the identifications on potential miRNA-disease associations have become a hotpot for providing better understanding of diseas...

SDResU-Net: Separable and Dilated Residual U-Net for MRI Brain Tumor Segmentation.

Current medical imaging
BACKGROUND: Glioma is one of the most common and aggressive primary brain tumors that endanger human health. Tumors segmentation is a key step in assisting the diagnosis and treatment of cancer disease. However, it is a relatively challenging task to...

Classification of Benign and Malignant Breast Masses on Mammograms for Large Datasets using Core Vector Machines.

Current medical imaging
BACKGROUND: Breast cancer is one of the most leading causes of cancer deaths among women. Early detection of cancer increases the survival rate of the affected women. Machine learning approaches that are used for classification of breast cancer usual...