AIMC Topic: Deep Learning

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Physics-informed deep learning for prediction of CO storage site response.

Journal of contaminant hydrology
Accurate prediction of the CO plume migration and pressure is imperative for safe operation and economic management of carbon storage projects. Numerical reservoir simulations of CO flow could be used for this purpose allowing the operators and stake...

DeepSIRT: A deep neural network for identification of sirtuin targets and their subcellular localizations.

Computational biology and chemistry
Sirtuins are a family of proteins that play a key role in regulating a wide range of cellular processes including DNA regulation, metabolism, aging/longevity, cell survival, apoptosis, and stress resistance. Sirtuins are protein deacetylases and incl...

A deep learning-based model for characterization of atherosclerotic plaque in coronary arteries using optical coherence tomography  images.

Medical physics
PURPOSE: Coronary artery events are mainly associated with atherosclerosis in adult population, which is recognized as accumulation of plaques in arterial wall tissues. Optical Coherence Tomography (OCT) is a light-based imaging system used in cardio...

DeepFrag: An Open-Source Browser App for Deep-Learning Lead Optimization.

Journal of chemical information and modeling
Lead optimization, a critical step in early stage drug discovery, involves making chemical modifications to a small-molecule ligand to improve properties such as binding affinity. We recently developed DeepFrag, a deep-learning model capable of recom...

Enhanced facial expression recognition using 3D point sets and geometric deep learning.

Medical & biological engineering & computing
Facial expression recognition plays an essential role in human conversation and human-computer interaction. Previous research studies have recognized facial expressions mainly based on 2D image processing requiring sensitive feature engineering and c...

Deep Learning-Based Advances in Protein Structure Prediction.

International journal of molecular sciences
Obtaining an accurate description of protein structure is a fundamental step toward understanding the underpinning of biology. Although recent advances in experimental approaches have greatly enhanced our capabilities to experimentally determine prot...

Classification and Prediction on the Effects of Nutritional Intake on Overweight/Obesity, Dyslipidemia, Hypertension and Type 2 Diabetes Mellitus Using Deep Learning Model: 4-7th Korea National Health and Nutrition Examination Survey.

International journal of environmental research and public health
Few studies have been conducted to classify and predict the influence of nutritional intake on overweight/obesity, dyslipidemia, hypertension and type 2 diabetes mellitus (T2DM) based on deep learning such as deep neural network (DNN). The present st...

DeepD2V: A Novel Deep Learning-Based Framework for Predicting Transcription Factor Binding Sites from Combined DNA Sequence.

International journal of molecular sciences
Predicting in vivo protein-DNA binding sites is a challenging but pressing task in a variety of fields like drug design and development. Most promoters contain a number of transcription factor (TF) binding sites, but only a small minority has been id...

DeepDISE: DNA Binding Site Prediction Using a Deep Learning Method.

International journal of molecular sciences
It is essential for future research to develop a new, reliable prediction method of DNA binding sites because DNA binding sites on DNA-binding proteins provide critical clues about protein function and drug discovery. However, the current prediction ...

Deep-Learning-Driven Quantification of Interstitial Fibrosis in Digitized Kidney Biopsies.

The American journal of pathology
Interstitial fibrosis and tubular atrophy (IFTA) on a renal biopsy are strong indicators of disease chronicity and prognosis. Techniques that are typically used for IFTA grading remain manual, leading to variability among pathologists. Accurate IFTA ...