AIMC Topic: Drug Interactions

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Predicting Drug-Target Affinity Based on Recurrent Neural Networks and Graph Convolutional Neural Networks.

Combinatorial chemistry & high throughput screening
BACKGROUND: Drug development requires a lot of money and time, and the outcome of the challenge is unknown. So, there is an urgent need for researchers to find a new approach that can reduce costs. Therefore, the identification of drug-target interac...

Comparative analysis of molecular fingerprints in prediction of drug combination effects.

Briefings in bioinformatics
Application of machine and deep learning methods in drug discovery and cancer research has gained a considerable amount of attention in the past years. As the field grows, it becomes crucial to systematically evaluate the performance of novel computa...

SSI-DDI: substructure-substructure interactions for drug-drug interaction prediction.

Briefings in bioinformatics
A major concern with co-administration of different drugs is the high risk of interference between their mechanisms of action, known as adverse drug-drug interactions (DDIs), which can cause serious injuries to the organism. Although several computat...

SumGNN: multi-typed drug interaction prediction via efficient knowledge graph summarization.

Bioinformatics (Oxford, England)
MOTIVATION: Thanks to the increasing availability of drug-drug interactions (DDI) datasets and large biomedical knowledge graphs (KGs), accurate detection of adverse DDI using machine learning models becomes possible. However, it remains largely an o...

Deep learning identifies synergistic drug combinations for treating COVID-19.

Proceedings of the National Academy of Sciences of the United States of America
Effective treatments for COVID-19 are urgently needed. However, discovering single-agent therapies with activity against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been challenging. Combination therapies play an important role i...

Improved prediction of drug-target interactions based on ensemble learning with fuzzy local ternary pattern.

Frontiers in bioscience (Landmark edition)
: The prediction of interacting drug-target pairs plays an essential role in the field of drug repurposing, and drug discovery. Although biotechnology and chemical technology have made extraordinary progress, the process of dose-response experiments ...

Drug-drug interaction prediction with Wasserstein Adversarial Autoencoder-based knowledge graph embeddings.

Briefings in bioinformatics
An interaction between pharmacological agents can trigger unexpected adverse events. Capturing richer and more comprehensive information about drug-drug interactions (DDIs) is one of the key tasks in public health and drug development. Recently, seve...

A span-graph neural model for overlapping entity relation extraction in biomedical texts.

Bioinformatics (Oxford, England)
MOTIVATION: Entity relation extraction is one of the fundamental tasks in biomedical text mining, which is usually solved by the models from natural language processing. Compared with traditional pipeline methods, joint methods can avoid the error pr...

Application of deep learning methods in biological networks.

Briefings in bioinformatics
The increase in biological data and the formation of various biomolecule interaction databases enable us to obtain diverse biological networks. These biological networks provide a wealth of raw materials for further understanding of biological system...

Prediction of drug adverse events using deep learning in pharmaceutical discovery.

Briefings in bioinformatics
Traditional machine learning methods used to detect the side effects of drugs pose significant challenges as feature engineering processes are labor-intensive, expert-dependent, time-consuming and cost-ineffective. Moreover, these methods only focus ...