AIMC Topic: Escherichia coli

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Integrating Machine Learning with MALDI-TOF Mass Spectrometry for Rapid and Accurate Antimicrobial Resistance Detection in Clinical Pathogens.

International journal of molecular sciences
Antimicrobial resistance (AMR) is one of the most pressing public health challenges of the 21st century. This study aims to evaluate the efficacy of mass spectral data generated by VITEK MS instruments for predicting antibiotic resistance in , , and ...

Deep Learning Predicts Non-Normal Transmission Distributions in High-Field Asymmetric Waveform Ion Mobility (FAIMS) Directly from Peptide Sequence.

Analytical chemistry
Peptide ion mobility adds an extra dimension of separation to mass spectrometry-based proteomics. The ability to accurately predict peptide ion mobility would be useful to expedite assay development and to discriminate true answers in a database sear...

PeptideForest: Semisupervised Machine Learning Integrating Multiple Search Engines for Peptide Identification.

Journal of proteome research
The first step in bottom-up proteomics is the assignment of measured fragmentation mass spectra to peptide sequences, also known as peptide spectrum matches. In recent years novel algorithms have pushed the assignment to new heights; unfortunately, d...

Explainable deep learning and virtual evolution identifies antimicrobial peptides with activity against multidrug-resistant human pathogens.

Nature microbiology
Artificial intelligence (AI) is a promising approach to identify new antimicrobial compounds in diverse microbial species. Here we developed an AI-based, explainable deep learning model, EvoGradient, that predicts the potency of antimicrobial peptide...

A Paradigm of Computer Vision and Deep Learning Empowers the Strain Screening and Bioprocess Detection.

Biotechnology and bioengineering
High-performance strain and corresponding fermentation process are essential for achieving efficient biomanufacturing. However, conventional offline detection methods for products are cumbersome and less stable, hindering the "Test" module in the ope...

An Integrated Microfluidic Microwave Array Sensor with Machine Learning for Enrichment and Detection of Mixed Biological Solution.

Biosensors
In this work, an integrated microfluidic microwave array sensor is proposed for the enrichment and detection of mixed biological solution. In individuals with urinary tract infections or intestinal health issues, the levels of white blood cells (WBCs...

Virtual Gram staining of label-free bacteria using dark-field microscopy and deep learning.

Science advances
Gram staining has been a frequently used staining protocol in microbiology. It is vulnerable to staining artifacts due to, e.g., operator errors and chemical variations. Here, we introduce virtual Gram staining of label-free bacteria using a trained ...

ARGai 1.0: A GAN augmented in silico approach for identifying resistant genes and strains in E. coli using vision transformer.

Computational biology and chemistry
The emergence of infectious disease and antibiotic resistance in bacteria like Escherichia coli (E. coli) shows the necessity for novel computational techniques for identifying essential genes that contribute to resistance. The task of identifying re...

High-throughput, rapid, and non-destructive detection of common foodborne pathogens via hyperspectral imaging coupled with deep neural networks and support vector machines.

Food research international (Ottawa, Ont.)
Foodborne pathogens such as Bacillus cereus, Staphylococcus aureus, and Escherichia coli are major causes of gastrointestinal diseases worldwide and frequently contaminate dairy products. Compared to nucleic acid detection and MALDI-TOF MS, hyperspec...