AIMC Topic: Machine Learning

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Identification of a novel Aurora B inhibitor using the AI-driven drug screening and docking-based traditional screening.

Bioorganic & medicinal chemistry
Aurora B, a subtype of Aurora kinases that functions as a serine/threonine kinase, playing a vital role in the process of mitosis, is often overexpressed in certain tumor cells leading to tumorigenesis and progression. Therefore, the development of s...

Machine learning and statistical inference in microbial population genomics.

Genome biology
The availability of large genome datasets has changed the microbiology research landscape. Analyzing such data requires computationally demanding analyses, and new approaches have come from different data analysis philosophies. Machine learning and s...

Accelerating antibody development: sequence and structure-based models for predicting developability properties via size exclusion chromatography.

mAbs
Experimental screening for biopharmaceutical developability properties typically relies on resource-intensive, and time-consuming assays such as size exclusion chromatography (SEC). This study highlights the potential of in silico models to accelerat...

Rapid Screening and Prioritization of Culture Conditions for Natural Product Discovery using the Liquid Microjunction Surface Sampling Probe.

Journal of the American Society for Mass Spectrometry
The discovery of novel bioactive compounds remains a cornerstone of natural product (NP) chemistry. However, traditional NP discovery workflows are time- and resource-intensive, hindering sustainability and efficiency of multicondition screening proj...

Bayesian Optimization for Efficient Multiobjective Formulation Development of Biologics.

Molecular pharmaceutics
Biologics, including emerging engineered formats, can often exhibit poor developability profiles, complicating their translation into successful therapeutics. While formulation design can substantially mitigate some developability issues, it represen...

Rethinking Retrosynthesis: Curriculum Learning Reshapes Transformer-Based Small-Molecule Reaction Prediction.

Journal of chemical information and modeling
Retrosynthesis prediction remains a central challenge in computational chemistry, particularly when models must generalize to rare or structurally complex reactions. We present a curriculum learning (CL) framework that reshapes model training by syst...

Freedom Space 3.0: ML-Assisted Selection of Synthetically Accessible Small Molecules.

Journal of chemical information and modeling
Advances in machine learning (ML) have revolutionized the exploration of chemical space, enabling the creation of subsets tailored for specific applications. Herein, we describe the development of Chemspace Freedom Space 3.0, a chemical library of sy...

Prediction of long-term uncorrected distance visual acuity in surgically SMILE corrected myopic eyes using machine learning.

BMJ open ophthalmology
BACKGROUND: This study aimed to create machine learning (ML) models to predict the long-term uncorrected distance visual acuity (UDVA) in myopic eyes corrected by small incision lenticule extraction (SMILE).

Enhancing accuracy of virtual kinase profiling via application of graph neural network to 3D pharmacophore ensembles.

Journal of computer-aided molecular design
Kinase profiling is an essential step in both hit identification and selectivity evaluation. Since in vitro testing of large chemical libraries is costly and time-consuming, a computational approach can be applied to narrow down the reasonable chemic...