AIMC Topic: Machine Learning

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Prostate segmentation in MRI using a convolutional neural network architecture and training strategy based on statistical shape models.

International journal of computer assisted radiology and surgery
PURPOSE: Most of the existing convolutional neural network (CNN)-based medical image segmentation methods are based on methods that have originally been developed for segmentation of natural images. Therefore, they largely ignore the differences betw...

Spatial and Time Domain Feature of ERP Speller System Extracted via Convolutional Neural Network.

Computational intelligence and neuroscience
Feature of event-related potential (ERP) has not been completely understood and illiteracy problem remains unsolved. To this end, P300 peak has been used as the feature of ERP in most brain-computer interface applications, but subjects who do not sho...

Predicting lysine-malonylation sites of proteins using sequence and predicted structural features.

Journal of computational chemistry
Malonylation is a recently discovered post-translational modification (PTM) in which a malonyl group attaches to a lysine (K) amino acid residue of a protein. In this work, a novel machine learning model, SPRINT-Mal, is developed to predict malonylat...

Machine Learning for Outcome Prediction in Electroencephalograph (EEG)-Monitored Children in the Intensive Care Unit.

Journal of child neurology
The aim of this study was to evaluate the performance of models predicting in-hospital mortality in critically ill children undergoing continuous electroencephalography (cEEG) in the intensive care unit (ICU). We evaluated the performance of machine ...

3D/2D model-to-image registration by imitation learning for cardiac procedures.

International journal of computer assisted radiology and surgery
PURPOSE: In cardiac interventions, such as cardiac resynchronization therapy (CRT), image guidance can be enhanced by involving preoperative models. Multimodality 3D/2D registration for image guidance, however, remains a significant research challeng...

Exploiting semantic patterns over biomedical knowledge graphs for predicting treatment and causative relations.

Journal of biomedical informatics
BACKGROUND: Identifying new potential treatment options for medical conditions that cause human disease burden is a central task of biomedical research. Since all candidate drugs cannot be tested with animal and clinical trials, in vitro approaches a...

Machine learning-based in-line holographic sensing of unstained malaria-infected red blood cells.

Journal of biophotonics
Accurate and immediate diagnosis of malaria is important for medication of the infectious disease. Conventional methods for diagnosing malaria are time consuming and rely on the skill of experts. Therefore, an automatic and simple diagnostic modality...

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0.

Molecular plant pathology
Plant-pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive improvements to EffectorP, the first machine learning classifier for fungal effector prediction. EffectorP 2.0 is now trained on a larger set of effectors...