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Unsupervised Clustering of Missense Variants in HNF1A Using Multidimensional Functional Data Aids Clinical Interpretation.

American journal of human genetics
Exome sequencing in diabetes presents a diagnostic challenge because depending on frequency, functional impact, and genomic and environmental contexts, HNF1A variants can cause maturity-onset diabetes of the young (MODY), increase type 2 diabetes ris...

ivis Dimensionality Reduction Framework for Biomacromolecular Simulations.

Journal of chemical information and modeling
Molecular dynamics (MD) simulations have been widely applied to study macromolecules including proteins. However, the high dimensionality of the data sets produced by simulations makes thorough analysis difficult and further hinders a deeper understa...

Learning machine approach reveals microbial signatures of diet and sex in dog.

PloS one
The characterization of the microbial population of many niches of the organism, as the gastrointestinal tract, is now possible thanks to the use of high-throughput DNA sequencing technique. Several studies in the companion animals field already inve...

Image Target Recognition via Mixed Feature-Based Joint Sparse Representation.

Computational intelligence and neuroscience
An image target recognition approach based on mixed features and adaptive weighted joint sparse representation is proposed in this paper. This method is robust to the illumination variation, deformation, and rotation of the target image. It is a data...

A machine learning approach identified a diagnostic model for pancreatic cancer through using circulating microRNA signatures.

Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.]
Late diagnosis of pancreatic cancer (PC) due to the limited effectiveness of modern testing approaches, causes many patients to miss the chance of surgery and consequently leads to a high mortality rate. Pivotal improvements in circulating microRNA e...

Gas-phase volatilomic approaches for quality control of brewing hops based on simultaneous GC-MS-IMS and machine learning.

Analytical and bioanalytical chemistry
For the first time, a prototype HS-GC-MS-IMS dual-detection system is presented for the analysis of volatile organic compounds (VOCs) in fields of quality control of brewing hop. With a soft ionization and drift time-based ion separation in IMS and a...

Raman spectroscopy of potential bio-hazards commonly found in bio-aerosols.

Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy
Pathogenic bio-aerosols are a threat to public health today, and thus quick detection and identification is of paramount importance. In this study, Raman spectroscopy was used to test 14 types of pollens, one type of fungus and two types of bacteria ...

Patterns of 1,748 Unique Human Alloimmune Responses Seen by Simple Machine Learning Algorithms.

Frontiers in immunology
Allele specific antibody response against the polymorphic system of HLA is the allogeneic response marker determining the immunological risk for graft acceptance before and after organ transplantation and therefore routinely studied during the patien...

Inexpensive, non-invasive biomarkers predict Alzheimer transition using machine learning analysis of the Alzheimer's Disease Neuroimaging (ADNI) database.

PloS one
The Alzheimer's Disease Neuroimaging (ADNI) database is an expansive undertaking by government, academia, and industry to pool resources and data on subjects at various stage of symptomatic severity due to Alzheimer's disease. As expected, magnetic r...