AIMC Topic: Protein Interaction Maps

Clear Filters Showing 411 to 420 of 453 articles

Artificial intelligence in the prediction of protein-ligand interactions: recent advances and future directions.

Briefings in bioinformatics
New drug production, from target identification to marketing approval, takes over 12 years and can cost around $2.6 billion. Furthermore, the COVID-19 pandemic has unveiled the urgent need for more powerful computational methods for drug discovery. H...

Detection of subtype-specific breast cancer surface protein biomarkers via a novel transcriptomics approach.

Bioscience reports
BACKGROUND: Cell-surface proteins have been widely used as diagnostic and prognostic markers in cancer research and as targets for the development of anticancer agents. So far, very few attempts have been made to characterize the surfaceome of patien...

Construction of a 5-feature gene model by support vector machine for classifying osteoporosis samples.

Bioengineered
Osteoporosis is a progressive bone disease in the elderly and lacks an effective classification method of patients. This study constructed a gene signature for an accurate prediction and classification of osteoporosis patients. Three gene expression ...

A nine-hub-gene signature of metabolic syndrome identified using machine learning algorithms and integrated bioinformatics.

Bioengineered
Early risk assessments and interventions for metabolic syndrome (MetS) are limited because of a lack of effective biomarkers. In the present study, several candidate genes were selected as a blood-based transcriptomic signature for MetS. We collected...

Identification of viral-mediated pathogenic mechanisms in neurodegenerative diseases using network-based approaches.

Briefings in bioinformatics
During the course of a viral infection, virus-host protein-protein interactions (PPIs) play a critical role in allowing viruses to replicate and survive within the host. These interspecies molecular interactions can lead to viral-mediated perturbatio...

SMMPPI: a machine learning-based approach for prediction of modulators of protein-protein interactions and its application for identification of novel inhibitors for RBD:hACE2 interactions in SARS-CoV-2.

Briefings in bioinformatics
Small molecule modulators of protein-protein interactions (PPIs) are being pursued as novel anticancer, antiviral and antimicrobial drug candidates. We have utilized a large data set of experimentally validated PPI modulators and developed machine le...

Prediction and collection of protein-metabolite interactions.

Briefings in bioinformatics
Interactions between proteins and small molecule metabolites play vital roles in regulating protein functions and controlling various cellular processes. The activities of metabolic enzymes, transcription factors, transporters and membrane receptors ...

Why can deep convolutional neural networks improve protein fold recognition? A visual explanation by interpretation.

Briefings in bioinformatics
As an essential task in protein structure and function prediction, protein fold recognition has attracted increasing attention. The majority of the existing machine learning-based protein fold recognition approaches strongly rely on handcrafted featu...

ProtFold-DFG: protein fold recognition by combining Directed Fusion Graph and PageRank algorithm.

Briefings in bioinformatics
As one of the most important tasks in protein structure prediction, protein fold recognition has attracted more and more attention. In this regard, some computational predictors have been proposed with the development of machine learning and artifici...

Application of deep learning methods in biological networks.

Briefings in bioinformatics
The increase in biological data and the formation of various biomolecule interaction databases enable us to obtain diverse biological networks. These biological networks provide a wealth of raw materials for further understanding of biological system...