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AxoNet: A deep learning-based tool to count retinal ganglion cell axons.
Scientific reports
May 15, 2020
In this work, we develop a robust, extensible tool to automatically and accurately count retinal ganglion cell axons in optic nerve (ON) tissue images from various animal models of glaucoma. We adapted deep learning to regress pixelwise axon count de...
PB-Net: Automatic peak integration by sequential deep learning for multiple reaction monitoring.
Journal of proteomics
May 13, 2020
Mass spectrometry (MS) based proteomics has become an indispensable component of modern molecular and cellular biochemistry analysis. Multiple reaction monitoring (MRM) is one of the most well-established MS techniques for molecule detection and quan...
CNN-Peaks: ChIP-Seq peak detection pipeline using convolutional neural networks that imitate human visual inspection.
Scientific reports
May 13, 2020
ChIP-seq is one of the core experimental resources available to understand genome-wide epigenetic interactions and identify the functional elements associated with diseases. The analysis of ChIP-seq data is important but poses a difficult computation...
Likelihood Ratios for Deep Neural Networks in Face Comparison.
Journal of forensic sciences
May 12, 2020
In this study, we aim to compare the performance of systems and forensic facial comparison experts in terms of likelihood ratio computation to assess the potential of the machine to support the human expert in the courtroom. In forensics, transparenc...
Contextual encoder-decoder network for visual saliency prediction.
Neural networks : the official journal of the International Neural Network Society
May 8, 2020
Predicting salient regions in natural images requires the detection of objects that are present in a scene. To develop robust representations for this challenging task, high-level visual features at multiple spatial scales must be extracted and augme...
Combined Machine Learning and Molecular Modelling Workflow for the Recognition of Potentially Novel Fungicides.
Molecules (Basel, Switzerland)
May 8, 2020
Novel machine learning and molecular modelling filtering procedures for drug repurposing have been carried out for the recognition of the novel fungicide targets of Cyp51 and Erg2. Classification and regression approaches on molecular descriptors hav...
Implementation of eHealth and AI integrated diagnostics with multidisciplinary digitized data: are we ready from an international perspective?
European radiology
May 6, 2020
Digitization of medicine requires systematic handling of the increasing amount of health data to improve medical diagnosis. In this context, the integration of the versatile diagnostic information, e.g., from anamnesis, imaging, histopathology, and c...
Multifaceted analysis of training and testing convolutional neural networks for protein secondary structure prediction.
PloS one
May 6, 2020
Protein secondary structure prediction remains a vital topic with broad applications. Due to lack of a widely accepted standard in secondary structure predictor evaluation, a fair comparison of predictors is challenging. A detailed examination of fac...
An Open-Source Computer Vision Tool for Automated Vocal Fold Tracking From Videoendoscopy.
The Laryngoscope
May 1, 2020
OBJECTIVES: Contemporary clinical assessment of vocal fold adduction and abduction is qualitative and subjective. Herein is described a novel computer vision tool for automated quantitative tracking of vocal fold motion from videolaryngoscopy. The po...
Developing successful environmental decision support systems: Challenges and best practices.
Journal of environmental management
Apr 29, 2020
Environmental decision support systems (EDSSs), or DSS applied in the environmental field, have been developed for over 40 years now. However, most of these tools fail to find use or fall out of use extremely quickly. In the aim of aiding in the conc...
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