AIMC Topic: Software

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Evolvix BEST Names for semantic reproducibility across code2brain interfaces.

Annals of the New York Academy of Sciences
Names in programming are vital for understanding the meaning of code and big data. We define code2brain (C2B) interfaces as maps in compilers and brains between meaning and naming syntax, which help to understand executable code. While working toward...

$\mathtt {Deepr}$: A Convolutional Net for Medical Records.

IEEE journal of biomedical and health informatics
Feature engineering remains a major bottleneck when creating predictive systems from electronic medical records. At present, an important missing element is detecting predictive regular clinical motifs from irregular episodic records. We present Deep...

Classification and Verification of Handwritten Signatures with Time Causal Information Theory Quantifiers.

PloS one
We present a new approach for handwritten signature classification and verification based on descriptors stemming from time causal information theory. The proposal uses the Shannon entropy, the statistical complexity, and the Fisher information evalu...

Who Should Decide How Machines Make Morally Laden Decisions?

Science and engineering ethics
Who should decide how a machine will decide what to do when it is driving a car, performing a medical procedure, or, more generally, when it is facing any kind of morally laden decision? More and more, machines are making complex decisions with a con...

Boosting Docking-Based Virtual Screening with Deep Learning.

Journal of chemical information and modeling
In this work, we propose a deep learning approach to improve docking-based virtual screening. The deep neural network that is introduced, DeepVS, uses the output of a docking program and learns how to extract relevant features from basic data such as...

The Human Phenotype Ontology in 2017.

Nucleic acids research
Deep phenotyping has been defined as the precise and comprehensive analysis of phenotypic abnormalities in which the individual components of the phenotype are observed and described. The three components of the Human Phenotype Ontology (HPO; www.hum...

Integrated Automatic Workflow for Phylogenetic Tree Analysis Using Public Access and Local Web Services.

Journal of integrative bioinformatics
At the present, coding sequence (CDS) has been discovered and larger CDS is being revealed frequently. Approaches and related tools have also been developed and upgraded concurrently, especially for phylogenetic tree analysis. This paper proposes an ...

LBSizeCleav: improved support vector machine (SVM)-based prediction of Dicer cleavage sites using loop/bulge length.

BMC bioinformatics
BACKGROUND: Dicer is necessary for the process of mature microRNA (miRNA) formation because the Dicer enzyme cleaves pre-miRNA correctly to generate miRNA with correct seed regions. Nonetheless, the mechanism underlying the selection of a Dicer cleav...

Two-Way Regularized Fuzzy Clustering of Multiple Correspondence Analysis.

Multivariate behavioral research
Multiple correspondence analysis (MCA) is a useful tool for investigating the interrelationships among dummy-coded categorical variables. MCA has been combined with clustering methods to examine whether there exist heterogeneous subclusters of a popu...

Classification of Porcine Cranial Fracture Patterns Using a Fracture Printing Interface.

Journal of forensic sciences
Distinguishing between accidental and abusive head trauma in children can be difficult, as there is a lack of baseline data for pediatric cranial fracture patterns. A porcine head model has recently been developed and utilized in a series of studies ...