AIMC Topic: Animals

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A null model of the mouse whole-neocortex micro-connectome.

Nature communications
In connectomics, the study of the network structure of connected neurons, great advances are being made on two different scales: that of macro- and meso-scale connectomics, studying the connectivity between populations of neurons, and that of micro-s...

Looking beyond the hype: Applied AI and machine learning in translational medicine.

EBioMedicine
Big data problems are becoming more prevalent for laboratory scientists who look to make clinical impact. A large part of this is due to increased computing power, in parallel with new technologies for high quality data generation. Both new and old t...

Environmental contaminants in coastal populations: Comparisons with the National Health and Nutrition Examination Survey (NHANES) and resident dolphins.

The Science of the total environment
BACKGROUND: People living in coastal communities are at risk for exposure to environmental hazards, including legacy chemicals. We can use databases such as NHANES to assess whether contaminants in coastal communities are present in higher levels tha...

Augmenting biologging with supervised machine learning to study behavior of the medusa .

The Journal of experimental biology
Zooplankton play critical roles in marine ecosystems, yet their fine-scale behavior remains poorly understood because of the difficulty in studying individuals Here, we combine biologging with supervised machine learning (ML) to propose a pipeline f...

Boosting phosphorylation site prediction with sequence feature-based machine learning.

Proteins
Protein phosphorylation is one of the essential posttranslation modifications playing a vital role in the regulation of many fundamental cellular processes. We propose a LightGBM-based computational approach that uses evolutionary, geometric, sequenc...

Using machine learning to estimate herbage production and nutrient uptake on Irish dairy farms.

Journal of dairy science
Nutrient management on grazed grasslands is of critical importance to maintain productivity levels, as grass is the cheapest feed for ruminants and underpins these meat and milk production systems. Many attempts have been made to model the relationsh...

Comparing regression, naive Bayes, and random forest methods in the prediction of individual survival to second lactation in Holstein cattle.

Journal of dairy science
In this study, we compared multiple logistic regression, a linear method, to naive Bayes and random forest, 2 nonlinear machine-learning methods. We used all 3 methods to predict individual survival to second lactation in dairy heifers. The data set ...

Sensory processing and categorization in cortical and deep neural networks.

NeuroImage
Many recent advances in artificial intelligence (AI) are rooted in visual neuroscience. However, ideas from more complicated paradigms like decision-making are less used. Although automated decision-making systems are ubiquitous (driverless cars, pil...

A non-linear mathematical model using optical sensor to predict heart decellularization efficacy.

Scientific reports
One of the main problems of the decellularization technique is the subjectivity of the final evaluation of its efficacy in individual organs. This problem can result in restricted cell repopulation reproducibility and worse responses to transplant ti...

A critique of pure learning and what artificial neural networks can learn from animal brains.

Nature communications
Artificial neural networks (ANNs) have undergone a revolution, catalyzed by better supervised learning algorithms. However, in stark contrast to young animals (including humans), training such networks requires enormous numbers of labeled examples, l...