AIMC Topic: Computational Biology

Clear Filters Showing 2381 to 2390 of 4583 articles

Comparison of different input modalities and network structures for deep learning-based seizure detection.

Scientific reports
The manual review of an electroencephalogram (EEG) for seizure detection is a laborious and error-prone process. Thus, automated seizure detection based on machine learning has been studied for decades. Recently, deep learning has been adopted in ord...

Machine-learning facilitates selection of a novel diagnostic panel of metabolites for the detection of heart failure.

Scientific reports
The metabolic derangement is common in heart failure with reduced ejection fraction (HFrEF). The aim of the study was to check feasibility of the combined approach of untargeted metabolomics and machine learning to create a simple and potentially cli...

Using Weighted Extreme Learning Machine Combined With Scale-Invariant Feature Transform to Predict Protein-Protein Interactions From Protein Evolutionary Information.

IEEE/ACM transactions on computational biology and bioinformatics
Protein-Protein Interactions (PPIs) play an irreplaceable role in biological activities of organisms. Although many high-throughput methods are used to identify PPIs from different kinds of organisms, they have some shortcomings, such as high cost an...

In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics.

Nature communications
Data-independent acquisition (DIA) is an emerging technology for quantitative proteomic analysis of large cohorts of samples. However, sample-specific spectral libraries built by data-dependent acquisition (DDA) experiments are required prior to DIA ...

pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens.

Cancer immunology research
Identification of neoantigens is a critical step in predicting response to checkpoint blockade therapy and design of personalized cancer vaccines. This is a cross-disciplinary challenge, involving genomics, proteomics, immunology, and computational a...

Interpreting neural decoding models using grouped model reliance.

PLoS computational biology
Machine learning algorithms are becoming increasingly popular for decoding psychological constructs based on neural data. However, as a step towards bridging the gap between theory-driven cognitive neuroscience and data-driven decoding approaches, th...

Machine and deep learning approaches for cancer drug repurposing.

Seminars in cancer biology
Knowledge of the underpinnings of cancer initiation, progression and metastasis has increased exponentially in recent years. Advanced "omics" coupled with machine learning and artificial intelligence (deep learning) methods have helped elucidate targ...

R/PY-SUMMA: An R/Python Package for Unsupervised Ensemble Learning for Binary Classification Problems in Bioinformatics.

Journal of computational biology : a journal of computational molecular cell biology
The increasing availability of complex data in biology and medicine has promoted the use of machine learning in classification tasks to address important problems in translational and fundamental science. Two important obstacles, however, may limit t...

The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation.

BMC genomics
BACKGROUND: To evaluate binary classifications and their confusion matrices, scientific researchers can employ several statistical rates, accordingly to the goal of the experiment they are investigating. Despite being a crucial issue in machine learn...

Seeking for potential pathogenic genes of major depressive disorder in the Gene Expression Omnibus database.

Asia-Pacific psychiatry : official journal of the Pacific Rim College of Psychiatrists
INTRODUCTION: Major depressive disorder (MDD) is one of the most common mental disorders worldwide. The aim of this study was to identify potential pathological genes in MDD.