AIMC Topic: Databases, Genetic

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An integrated approach for key gene selection and cancer phenotype classification: Improving diagnosis and prediction.

Computers in biology and medicine
The identification of key features and reliable phenotype classification remains pivotal in cancer research, with direct implications for early diagnosis, prognosis, treatment optimization, and cost reduction in healthcare. This study introduces a hy...

Developing a Panel of Shared Susceptibility Genes as Diagnostic Biomarkers for chronic obstructive pulmonary disease and Heart Failure.

Computers in biology and medicine
AIM: Chronic obstructive pulmonary disease (COPD) and heart failure (HF) are closely intertwined comorbidities that present significant clinical challenges due to the poorly understood pathophysiological mechanisms driving their coexistence. In this ...

Combination of machine learning and protein‑protein interaction network established one ATM‑DPP4‑TXN ferroptotic diagnostic model with experimental validation.

Molecular medicine reports
Ferroptosis and lethal sepsis are interlinked, although this association remains largely unknown to clinical panels. Sepsis is characterized by dysfunction of the inflammatory microenvironment. Most septic biomarkers lack independent validation, and ...

A multi-phase approach using supervised algorithms and clinical models to generate high-accuracy signatures for pancreatic cancer.

Computers in biology and medicine
BACKGROUND: The in silico analyses provide evidence supporting the potential of methylation-driven differentially expressed genes as therapeutic targets across cancer types. This leads us to identify novel targets and their associated drug compounds ...

A novel Harris Hawks Optimization-based clustering method for elucidating genetic associations in osteoarthritis and Diverse Cancer Types.

Computers in biology and medicine
Considering the high incidence of osteoarthritis (OA), especially of the knee and hip, this study explores the possible genetic associations between OA and cancer types, including cancers of the bladder, kidney, breast, and prostate. The objective of...

Autophagy-related gene SQSTM1 predicts the prognosis of hepatocellular carcinoma.

Computers in biology and medicine
BACKGROUND: The relationship between autophagy and the progression of hepatocellular carcinoma (HCC) is notably substantial, yet the underlying mechanisms remain incompletely elucidated. Our objective is to construct a predictive model, thereby provi...

Identification and prioritization of disease candidate genes using biomedical named entity recognition and random forest classification.

Computers in biology and medicine
BACKGROUND AND OBJECTIVE: The elucidation of candidate genes is fundamental to comprehending intricate diseases, vital for early diagnosis, personalized treatment, and drug discovery. Traditional Disease Gene Identification methods encounter limitati...

Cancer type and survival prediction based on transcriptomic feature map.

Computers in biology and medicine
This study achieved cancer type and survival time prediction by transforming transcriptomic features into feature maps and employing deep learning models. Using transcriptomic data from 27 cancer types and survival data from 10 types in the TCGA data...

GDReCo: Fine-grained gene-disease relationship extraction corpus.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVE: Understanding gene-disease relationships is crucial for medical research, drug discovery, clinical diagnosis, and other fields. However, there is currently no high-quality, fine-grained corpus available for training Natural ...

GOReverseLookup: A gene ontology reverse lookup tool.

Computers in biology and medicine
BACKGROUND AND OBJECTIVE: The Gene Ontology (GO) project has been pivotal in providing a structured framework for characterizing genes and annotating them to specific biological concepts. While traditional gene annotation primarily focuses on mapping...