AIMC Topic: Imaging, Three-Dimensional

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GroupRegNet: a groupwise one-shot deep learning-based 4D image registration method.

Physics in medicine and biology
Accurate deformable four-dimensional (4D) (three-dimensional in space and time) medical images registration is essential in a variety of medical applications. Deep learning-based methods have recently gained popularity in this area for the significan...

A Stacked Generalization of 3D Orthogonal Deep Learning Convolutional Neural Networks for Improved Detection of White Matter Hyperintensities in 3D FLAIR Images.

AJNR. American journal of neuroradiology
BACKGROUND AND PURPOSE: Accurate and reliable detection of white matter hyperintensities and their volume quantification can provide valuable clinical information to assess neurologic disease progression. In this work, a stacked generalization ensemb...

DeepACSON automated segmentation of white matter in 3D electron microscopy.

Communications biology
Tracing the entirety of ultrastructures in large three-dimensional electron microscopy (3D-EM) images of the brain tissue requires automated segmentation techniques. Current segmentation techniques use deep convolutional neural networks (DCNNs) and r...

Neural network enhanced 3D turbo spin echo for MR intracranial vessel wall imaging.

Magnetic resonance imaging
PURPOSE: To improve the signal-to-noise ratio (SNR) and image sharpness for whole brain isotropic 0.5 mm three-dimensional (3D) T weighted (Tw) turbo spin echo (TSE) intracranial vessel wall imaging (IVWI) at 3 T.

Transformation-Consistent Self-Ensembling Model for Semisupervised Medical Image Segmentation.

IEEE transactions on neural networks and learning systems
A common shortfall of supervised deep learning for medical imaging is the lack of labeled data, which is often expensive and time consuming to collect. This article presents a new semisupervised method for medical image segmentation, where the networ...

Deep learning for the fully automated segmentation of the inner ear on MRI.

Scientific reports
Segmentation of anatomical structures is valuable in a variety of tasks, including 3D visualization, surgical planning, and quantitative image analysis. Manual segmentation is time-consuming and deals with intra and inter-observer variability. To dev...

2D to 3D Evolutionary Deep Convolutional Neural Networks for Medical Image Segmentation.

IEEE transactions on medical imaging
Developing a Deep Convolutional Neural Network (DCNN) is a challenging task that involves deep learning with significant effort required to configure the network topology. The design of a 3D DCNN not only requires a good complicated structure but als...

Spherical-Patches Extraction for Deep-Learning-Based Critical Points Detection in 3D Neuron Microscopy Images.

IEEE transactions on medical imaging
Digital reconstruction of neuronal structures is very important to neuroscience research. Many existing reconstruction algorithms require a set of good seed points. 3D neuron critical points, including terminations, branch points and cross-over point...

A Curvature-Enhanced Random Walker Segmentation Method for Detailed Capture of 3D Cell Surface Membranes.

IEEE transactions on medical imaging
High-resolution 3D microscopy is a fast advancing field and requires new techniques in image analysis to handle these new datasets. In this work, we focus on detailed 3D segmentation of Dictyostelium cells undergoing macropinocytosis captured on an i...

VC-Net: Deep Volume-Composition Networks for Segmentation and Visualization of Highly Sparse and Noisy Image Data.

IEEE transactions on visualization and computer graphics
The fundamental motivation of the proposed work is to present a new visualization-guided computing paradigm to combine direct 3D volume processing and volume rendered clues for effective 3D exploration. For example, extracting and visualizing microst...