AIMC Topic: Machine Learning

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Navigating protein landscapes with a machine-learned transferable coarse-grained model.

Nature chemistry
The most popular and universally predictive protein simulation models employ all-atom molecular dynamics, but they come at extreme computational cost. The development of a universal, computationally efficient coarse-grained (CG) model with similar pr...

STHD: probabilistic cell typing of single spots in whole transcriptome spatial data with high definition.

Genome biology
Recent advances in spatial transcriptomics technologies have enabled gene expression profiling across the transcriptome in spots with subcellular resolution, but high sparsity and dimensionality present significant computational challenges. We presen...

Machine learning and discriminant analysis model for predicting benign and malignant pulmonary nodules.

BMC medical informatics and decision making
BACKGROUND: Pulmonary Nodules (PNs) are a trend considered as the early manifestation of lung cancer. Among them, PNs that remain stable for more than two years or whose pathological results suggest not being lung cancer are considered benign PNs (BP...

A densely connected framework for cancer subtype classification.

BMC bioinformatics
BACKGROUND: Reliable identification of cancer subtypes is crucial for devising personalized treatment strategies. Integrating multi-omics data has proven to be an effective method for analyzing cancer subtypes. By combining molecular information acro...

Sex estimation with parameters of the facial canal by computed tomography using machine learning algorithms and artificial neural networks.

BMC medical imaging
BACKGROUND: The skull is highly durable and plays a significant role in sex determination as one of the most dimorphic bones. The facial canal (FC), a clinically significant canal within the temporal bone, houses the facial nerve. This study aims to ...

Using machine learning to discover DNA metabolism biomarkers that direct prostate cancer treatment.

Scientific reports
DNA metabolism genes play pivotal roles in the regulation of cellular processes that contribute to cancer progression, immune modulation, and therapeutic response in prostate cancer (PC). Understanding the mechanisms by which these genes influence th...

Machine learning framework for oxytetracycline removal using nanostructured cupric oxide supported on magnetic chitosan alginate biocomposite.

Scientific reports
This research proposes a machine learning controlled method for removing the antibiotic oxytetracycline (OTC) from liquids through the use of nanostructured cupric oxide (CuO) nanoparticles. These nanoparticles are attached to magnetic chitosan/algin...

Determination of lung cancer exhaled breath biomarkers using machine learning-a new analysis framework.

Scientific reports
Exhaled breath samples of lung cancer patients (LC), tuberculosis (TB) patients and asymptomatic controls (C) were analyzed using gas chromatography-mass spectrometry (GC-MS). Ten volatile organic compounds (VOCs) were identified as possible biomarke...

Machine learning for the prediction of augmented renal clearance (ARC) in patients with sepsis in critical care units.

Scientific reports
This study aims to establish and validate prediction models based on novel machine learning (ML) algorithms for augmented renal clearance (ARC) in critically ill patients with sepsis. Patients with sepsis were extracted from the Medical Information M...

Machine learning technology in the classification of glaucoma severity using fundus photographs.

Scientific reports
This study evaluates the performance of a machine learning model in classifying glaucoma severity using color fundus photographs. Glaucoma severity grading was based on the Hodapp-Parrish-Anderson (HPA) criteria incorporating the mean deviation value...