With the rapid increase in sequencing data, human host status inference (e.g. healthy or sick) from microbiome data has become an important issue. Existing studies are mostly based on single-point microbiome composition, while it is rare that the hos...
Journal of gastroenterology and hepatology
Apr 1, 2021
Gut microbiota has been shown to associate with the development of gastrointestinal diseases. In the last decade, development in whole metagenome sequencing and 16S rRNA sequencing technology has dramatically accelerated the gut microbiome's research...
MOTIVATION: With the development of high-throughput sequencing techniques for 16S-rRNA gene profiling, the analysis of microbial communities is becoming more and more attractive and reliable. Inferring the direct interaction network among microbial c...
Nan fang yi ke da xue xue bao = Journal of Southern Medical University
Mar 20, 2018
OBJECTIVE: To investigate the effects of prebiotics supplementation for 9 days on gut microbiota structure and function and establish a machine learning model based on the initial gut microbiota data for predicting the variation of Bifidobacterium af...
In this research, microorganisms in rhizosphere/non-rhizosphere soils of in the Yeyahu Wetland were studied. A sequential extraction procedure was used to analyze the phosphorus (P) forms in the rhizosphere/non-rhizosphere soil with a variety of pla...
Nan fang yi ke da xue xue bao = Journal of Southern Medical University
Mar 20, 2017
OBJECTIVE: To establish a machine learning model based on gut microbiota for predicting the level of trimethylamine N-oxide (TMAO) metabolism in vivo after choline intake to provide guidance of individualized precision diet and evidence for screening...
International journal of data mining and bioinformatics
Jan 1, 2015
In order to analyse the similarity among microbial communities on functional state after assigning 16S rRNA sequences from all microbial communities to species. It's an important addition to the species-level relationship between two compared communi...