AIMC Topic: Atlases as Topic

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Volumetric atlas of the rat inner ear from microCT and iDISCO+ cleared temporal bones.

PeerJ
BACKGROUND: Volumetric atlases are an invaluable tool in neuroscience and otolaryngology, greatly aiding experiment planning and surgical interventions, as well as the interpretation of experimental and clinical data. The rat is a major animal model ...

Parcellation of individual brains: From group level atlas to precise mapping.

Neuroscience and biobehavioral reviews
Individual brains vary greatly in morphology, connectivity, and organization. Group-level brain parcellations, which do not account for individual variations in brain parcels, are increasingly limited in their applicability, especially given the rapi...

Deep learning applied to the segmentation of rodent brain MRI data outperforms noisy ground truth on full-fledged brain atlases.

NeuroImage
Translational magnetic resonance imaging of the rodent brain provides invaluable information for preclinical drug development. However, the automated segmentation of such images for quantitative analyses is limited compared to human brain imaging mai...

Hierarchical Graph Convolutional Network Built by Multiscale Atlases for Brain Disorder Diagnosis Using Functional Connectivity.

IEEE transactions on neural networks and learning systems
Functional connectivity network (FCN) data from functional magnetic resonance imaging (fMRI) is increasingly used for the diagnosis of brain disorders. However, state-of-the-art studies used to build the FCN using a single brain parcellation atlas at...

Integrating large-scale single-cell RNA sequencing in central nervous system disease using self-supervised contrastive learning.

Communications biology
The central nervous system (CNS) comprises a diverse range of brain cell types with distinct functions and gene expression profiles. Although single-cell RNA sequencing (scRNA-seq) provides new insights into the brain cell atlases, integrating large-...

Real-world exoskeletons are better than those in the movie .

Science robotics
The recent movie misses fundamental robotics advances in self-stabilization and human-robot interaction.

MesoNet allows automated scaling and segmentation of mouse mesoscale cortical maps using machine learning.

Nature communications
Understanding the basis of brain function requires knowledge of cortical operations over wide spatial scales and the quantitative analysis of brain activity in well-defined brain regions. Matching an anatomical atlas to brain functional data requires...

Evaluation of auto-segmentation accuracy of cloud-based artificial intelligence and atlas-based models.

Radiation oncology (London, England)
BACKGROUND: Contour delineation, a crucial process in radiation oncology, is time-consuming and inaccurate due to inter-observer variation has been a critical issue in this process. An atlas-based automatic segmentation was developed to improve the d...

Strategies for feature extraction from structural brain imaging in lesion-deficit modelling.

Human brain mapping
High-dimensional modelling of post-stroke deficits from structural brain imaging is highly relevant to basic cognitive neuroscience and bears the potential to be translationally used to guide individual rehabilitation measures. One strategy to optimi...

Integration of machine learning and genome-scale metabolic modeling identifies multi-omics biomarkers for radiation resistance.

Nature communications
Resistance to ionizing radiation, a first-line therapy for many cancers, is a major clinical challenge. Personalized prediction of tumor radiosensitivity is not currently implemented clinically due to insufficient accuracy of existing machine learnin...