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Atlases as Topic

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The SESAME Human-Earth Atlas.

Scientific data
Human activities such as food production, mining, transportation, and construction have extensively modified Earth's land and marine environments, causing biodiversity loss, water pollution, soil erosion, and climate change. However, studying spatial...

Evaluation of auto-segmentation accuracy of cloud-based artificial intelligence and atlas-based models.

Radiation oncology (London, England)
BACKGROUND: Contour delineation, a crucial process in radiation oncology, is time-consuming and inaccurate due to inter-observer variation has been a critical issue in this process. An atlas-based automatic segmentation was developed to improve the d...

MesoNet allows automated scaling and segmentation of mouse mesoscale cortical maps using machine learning.

Nature communications
Understanding the basis of brain function requires knowledge of cortical operations over wide spatial scales and the quantitative analysis of brain activity in well-defined brain regions. Matching an anatomical atlas to brain functional data requires...

DrugMAP: molecular atlas and pharma-information of all drugs.

Nucleic acids research
The efficacy and safety of drugs are widely known to be determined by their interactions with multiple molecules of pharmacological importance, and it is therefore essential to systematically depict the molecular atlas and pharma-information of studi...

HervD Atlas: a curated knowledgebase of associations between human endogenous retroviruses and diseases.

Nucleic acids research
Human endogenous retroviruses (HERVs), as remnants of ancient exogenous retrovirus infected and integrated into germ cells, comprise ∼8% of the human genome. These HERVs have been implicated in numerous diseases, and extensive research has been condu...

Real-world exoskeletons are better than those in the movie .

Science robotics
The recent movie misses fundamental robotics advances in self-stabilization and human-robot interaction.

Integrating large-scale single-cell RNA sequencing in central nervous system disease using self-supervised contrastive learning.

Communications biology
The central nervous system (CNS) comprises a diverse range of brain cell types with distinct functions and gene expression profiles. Although single-cell RNA sequencing (scRNA-seq) provides new insights into the brain cell atlases, integrating large-...

Deep learning applied to the segmentation of rodent brain MRI data outperforms noisy ground truth on full-fledged brain atlases.

NeuroImage
Translational magnetic resonance imaging of the rodent brain provides invaluable information for preclinical drug development. However, the automated segmentation of such images for quantitative analyses is limited compared to human brain imaging mai...

OpenMAP-T1: A Rapid Deep-Learning Approach to Parcellate 280 Anatomical Regions to Cover the Whole Brain.

Human brain mapping
This study introduces OpenMAP-T1, a deep-learning-based method for rapid and accurate whole-brain parcellation in T1- weighted brain MRI, which aims to overcome the limitations of conventional normalization-to-atlas-based approaches and multi-atlas l...

Hierarchical Graph Convolutional Network Built by Multiscale Atlases for Brain Disorder Diagnosis Using Functional Connectivity.

IEEE transactions on neural networks and learning systems
Functional connectivity network (FCN) data from functional magnetic resonance imaging (fMRI) is increasingly used for the diagnosis of brain disorders. However, state-of-the-art studies used to build the FCN using a single brain parcellation atlas at...