AIMC Topic: Caenorhabditis elegans

Clear Filters Showing 31 to 40 of 102 articles

Volumetric imaging of fast cellular dynamics with deep learning enhanced bioluminescence microscopy.

Communications biology
Bioluminescence microscopy is an appealing alternative to fluorescence microscopy, because it does not depend on external illumination, and consequently does neither produce spurious background autofluorescence, nor perturb intrinsically photosensiti...

Fast, efficient, and accurate neuro-imaging denoising via supervised deep learning.

Nature communications
Volumetric functional imaging is widely used for recording neuron activities in vivo, but there exist tradeoffs between the quality of the extracted calcium traces, imaging speed, and laser power. While deep-learning methods have recently been applie...

A deep learning method for predicting molecular properties and compound-protein interactions.

Journal of molecular graphics & modelling
Predicting molecular properties and compound-protein interactions (CPIs) are two important areas of drug design and discovery. They are also an essential way to discover lead compounds in virtual screening. Recently, in silico methods based on deep l...

Gene function prediction in five model eukaryotes exclusively based on gene relative location through machine learning.

Scientific reports
The function of most genes is unknown. The best results in automated function prediction are obtained with machine learning-based methods that combine multiple data sources, typically sequence derived features, protein structure and interaction data....

Microrobotic Swarms for Intracellular Measurement with Enhanced Signal-to-Noise Ratio.

ACS nano
In cell biology, fluorescent dyes are routinely used for biochemical measurements. The traditional global dye treatment method suffers from low signal-to-noise ratios (SNR), especially when used for detecting a low concentration of ions, and increasi...

Nucleosome positioning based on DNA sequence embedding and deep learning.

BMC genomics
BACKGROUND: Nucleosome positioning is the precise determination of the location of nucleosomes on DNA sequence. With the continuous advancement of biotechnology and computer technology, biological data is showing explosive growth. It is of practical ...

Deep learning for robust and flexible tracking in behavioral studies for C. elegans.

PLoS computational biology
Robust and accurate behavioral tracking is essential for ethological studies. Common methods for tracking and extracting behavior rely on user adjusted heuristics that can significantly vary across different individuals, environments, and experimenta...

Multiview motion tracking based on a cartesian robot to monitor Caenorhabditis elegans in standard Petri dishes.

Scientific reports
Data from manual healthspan assays of the nematode Caenorhabditis elegans (C. elegans) can be complex to quantify. The first attempts to quantify motor performance were done manually, using the so-called thrashing or body bends assay. Some laboratori...

Using Convolutional Neural Networks to Measure the Physiological Age of Caenorhabditis elegans.

IEEE/ACM transactions on computational biology and bioinformatics
Caenorhabditis elegans (C. elegans) is a popular and excellent model for studies of aging due to its short lifespan. Methods for precisely measuring the physiological age of C. elegans are critically needed, especially for antiaging drug screening an...

Multiview confocal super-resolution microscopy.

Nature
Confocal microscopy remains a major workhorse in biomedical optical microscopy owing to its reliability and flexibility in imaging various samples, but suffers from substantial point spread function anisotropy, diffraction-limited resolution, depth-d...