AIMC Topic: Deep Learning

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Evaluating and enhancing the robustness of vision transformers against adversarial attacks in medical imaging.

Medical & biological engineering & computing
Deep neural networks (DNNs) have demonstrated exceptional performance in medical image analysis. However, recent studies have uncovered significant vulnerabilities in DNN models, particularly their susceptibility to adversarial attacks that manipulat...

ANTIPASTI: Interpretable prediction of antibody binding affinity exploiting normal modes and deep learning.

Structure (London, England : 1993)
The high binding affinity of antibodies toward their cognate targets is key to eliciting effective immune responses, as well as to the use of antibodies as research and therapeutic tools. Here, we propose ANTIPASTI, a convolutional neural network mod...

Deep learning analysis of histopathological images predicts immunotherapy prognosis and reveals tumour microenvironment features in non-small cell lung cancer.

British journal of cancer
BACKGROUND: Non-small cell lung cancer (NSCLC) is one of the leading causes of cancer mortality worldwide. Immune checkpoint inhibitors (ICIs) have emerged as a crucial treatment option for patients with advanced NSCLC. However, only a subset of pati...

Demonstration-based learning for few-shot biomedical named entity recognition under machine reading comprehension.

Journal of biomedical informatics
OBJECTIVE: Although deep learning techniques have shown significant achievements, they frequently depend on extensive amounts of hand-labeled data and tend to perform inadequately in few-shot scenarios. The objective of this study is to devise a stra...

An Efficient Muscle Segmentation Method via Bayesian Fusion of Probabilistic Shape Modeling and Deep Edge Detection.

IEEE transactions on bio-medical engineering
OBJECTIVE: Paraspinal muscle segmentation and reconstruction from MR images are critical to implement quantitative assessment of chronic and recurrent low back pains. Due to unclear muscle boundaries and shape variations, current segmentation methods...

Deep Autoencoder for Real-Time Single-Channel EEG Cleaning and Its Smartphone Implementation Using TensorFlow Lite With Hardware/Software Acceleration.

IEEE transactions on bio-medical engineering
OBJECTIVE: To remove signal contamination in electroencephalogram (EEG) traces coming from ocular, motion, and muscular artifacts which degrade signal quality. To do this in real-time, with low computational overhead, on a mobile platform in a channe...

Antiviral Peptide-Generative Pre-Trained Transformer (AVP-GPT): A Deep Learning-Powered Model for Antiviral Peptide Design with High-Throughput Discovery and Exceptional Potency.

Viruses
Traditional antiviral peptide (AVP) discovery is a time-consuming and expensive process. This study introduces AVP-GPT, a novel deep learning method utilizing transformer-based language models and multimodal architectures specifically designed for AV...

Patient-Specific Deep Learning Tracking Framework for Real-Time 2D Target Localization in Magnetic Resonance Imaging-Guided Radiation Therapy.

International journal of radiation oncology, biology, physics
PURPOSE: We propose a tumor tracking framework for 2D cine magnetic resonance imaging (MRI) based on a pair of deep learning (DL) models relying on patient-specific (PS) training.

Integrating VAI-Assisted Quantified CXRs and Multimodal Data to Assess the Risk of Mortality.

Journal of imaging informatics in medicine
To address the unmet need for a widely available examination for mortality prediction, this study developed a foundation visual artificial intelligence (VAI) to enhance mortality risk stratification using chest X-rays (CXRs). The VAI employed deep le...