AIMC Topic: Neoplasms

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A hybrid Neural Network Model for Joint Prediction of Presence and Period Assertions of Medical Events in Clinical Notes.

AMIA ... Annual Symposium proceedings. AMIA Symposium
In this paper, we propose a novel neural network architecture for clinical text mining. We formulate this hybrid neural network model (HNN), composed of recurrent neural network and deep residual network, to jointly predict the presence and period as...

Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data.

PLoS computational biology
Artificial neural networks (ANN) are computing architectures with many interconnections of simple neural-inspired computing elements, and have been applied to biomedical fields such as imaging analysis and diagnosis. We have developed a new ANN frame...

Transfer Learning for Molecular Cancer Classification Using Deep Neural Networks.

IEEE/ACM transactions on computational biology and bioinformatics
The emergence of deep learning has impacted numerous machine learning based applications and research. The reason for its success lies in two main advantages: 1) it provides the ability to learn very complex non-linear relationships between features ...

Radiomics in radiooncology - Challenging the medical physicist.

Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics (AIFB)
PURPOSE: Noticing the fast growing translation of artificial intelligence (AI) technologies to medical image analysis this paper emphasizes the future role of the medical physicist in this evolving field. Specific challenges are addressed when implem...

Big Data Toolsets to Pharmacometrics: Application of Machine Learning for Time-to-Event Analysis.

Clinical and translational science
Additional value can be potentially created by applying big data tools to address pharmacometric problems. The performances of machine learning (ML) methods and the Cox regression model were evaluated based on simulated time-to-event data synthesized...

Using Big Data Analytics to Advance Precision Radiation Oncology.

International journal of radiation oncology, biology, physics
Big clinical data analytics as a primary component of precision medicine is discussed, identifying where these emerging tools fit in the spectrum of genomics and radiomics research. A learning health system (LHS) is conceptualized that uses clinicall...

Repurposing High-Throughput Image Assays Enables Biological Activity Prediction for Drug Discovery.

Cell chemical biology
In both academia and the pharmaceutical industry, large-scale assays for drug discovery are expensive and often impractical, particularly for the increasingly important physiologically relevant model systems that require primary cells, organoids, who...

Microvessel prediction in H&E Stained Pathology Images using fully convolutional neural networks.

BMC bioinformatics
BACKGROUND: Pathological angiogenesis has been identified in many malignancies as a potential prognostic factor and target for therapy. In most cases, angiogenic analysis is based on the measurement of microvessel density (MVD) detected by immunostai...

Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires.

Frontiers in immunology
The adaptive immune system recognizes antigens an immense array of antigen-binding antibodies and T-cell receptors, the immune repertoire. The interrogation of immune repertoires is of high relevance for understanding the adaptive immune response in...

SetSVM: An Approach to Set Classification in Nuclei-Based Cancer Detection.

IEEE journal of biomedical and health informatics
Due to the importance of nuclear structure in cancer diagnosis, several predictive models have been described for diagnosing a wide variety of cancers based on nuclear morphology. In many computer-aided diagnosis (CAD) systems, cancer detection tasks...