AIMC Topic: Salmonella enterica
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Machine learning reveals the dynamic importance of accessory sequences for outbreak clustering.
mBio
Jan 28, 2025
UNLABELLED: Bacterial typing at whole-genome scales is now feasible owing to decreasing costs in high-throughput sequencing and the recent advances in computation. The unprecedented resolution of whole-genome typing is achieved by genotyping the vari...
An exploration of descriptive machine learning approaches for antimicrobial resistance: Multidrug resistance patterns in Salmonella enterica.
Preventive veterinary medicine
Jul 2, 2024
Salmonellosis is one of the most common foodborne diseases worldwide, with the ability to infect humans and animals. Antimicrobial resistance (AMR) and, particularly, multidrug resistance (MDR) among Salmonella enterica poses a risk to human health. ...
Machine learning-driven electronic identifications of single pathogenic bacteria.
Scientific reports
Sep 23, 2020
A rapid method for screening pathogens can revolutionize health care by enabling infection control through medication before symptom. Here we report on label-free single-cell identifications of clinically-important pathogenic bacteria by using a poly...
Rapid identification of pathogenic bacteria using Raman spectroscopy and deep learning.
Nature communications
Oct 30, 2019
Raman optical spectroscopy promises label-free bacterial detection, identification, and antibiotic susceptibility testing in a single step. However, achieving clinically relevant speeds and accuracies remains challenging due to weak Raman signal from...
Methicillin-Resistant Staphylococcus aureus
Candida
Bacterial Infections
Principal Component Analysis
Support Vector Machine
Escherichia coli
Staphylococcus aureus
Streptococcus
Bacterial Typing Techniques
Proteus mirabilis
Pseudomonas aeruginosa
Salmonella enterica
Klebsiella
Enterococcus
Neural Networks, Computer
Anti-Bacterial Agents
Deep Learning
Microbial Sensitivity Tests
Single-Cell Analysis
Bacteria
Logistic Models
Spectrum Analysis, Raman
Humans
Sanitation of tomatoes based on a combined approach of washing process and pulsed light in conjunction with selected disinfectants.
Food research international (Ottawa, Ont.)
Sep 10, 2018
In this study, we evaluated the performance of a large-scale decontamination system based on a washing process in combination with pulsed light (PL) exposure and HO/chlorine. In order to identify optimum processing condition, we first evaluated the e...
Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica.
PLoS genetics
May 8, 2018
Emerging pathogens are a major threat to public health, however understanding how pathogens adapt to new niches remains a challenge. New methods are urgently required to provide functional insights into pathogens from the massive genomic data sets no...
In vitro activity of Nigella sativa against antibiotic resistant Salmonella enterica.
Environmental toxicology and pharmacology
Dec 17, 2017
Salmonellosis is a major food-borne disease worldwide and antimicrobial resistance in Salmonella is a public health problem. Phytochemicals are alternative therapeutics to treat antibiotic resistant Salmonella. Biochemically identified Salmonella ent...
Patchy promiscuity: machine learning applied to predict the host specificity of and .
Microbial genomics
Oct 3, 2017
and are bacterial species that colonize different animal hosts with sub-types that can cause life-threatening infections in humans. Source attribution of zoonoses is an important goal for infection control as is identification of isolates in reserv...
Designing a biochip following multiplex polymerase chain reaction for the detection of Salmonella serovars Typhimurium, Enteritidis, Infantis, Hadar, and Virchow in poultry products.
Journal of food and drug analysis
Mar 7, 2017
Salmonella-contaminated foods, especially poultry-derived foods (eggs, chicken meat), are the major source of salmonellosis. Not only in the European Union (EU), but also in the United States, Japan, and other countries, has salmonellosis been an iss...
The locus of heat resistance (LHR) mediates heat resistance in Salmonella enterica, Escherichia coli and Enterobacter cloacae.
Food microbiology
Dec 29, 2016
Enterobacteriaceae comprise food spoilage organisms as well as food-borne pathogens including Escherichia coli. Heat resistance in E. coli was attributed to a genomic island called the locus of heat resistance (LHR). This genomic island is also prese...
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