AIMC Topic: Supervised Machine Learning

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Machine learning for syndromic surveillance using veterinary necropsy reports.

PloS one
The use of natural language data for animal population surveillance represents a valuable opportunity to gather information about potential disease outbreaks, emerging zoonotic diseases, or bioterrorism threats. In this study, we evaluate machine lea...

Learning metal artifact reduction in cardiac CT images with moving pacemakers.

Medical image analysis
Metal objects in the human heart such as implanted pacemakers frequently lead to heavy artifacts in reconstructed CT image volumes. Due to cardiac motion, common metal artifact reduction methods which assume a static object during CT acquisition are ...

Quantitative Thermal Imaging Biomarkers to Detect Acute Skin Toxicity From Breast Radiation Therapy Using Supervised Machine Learning.

International journal of radiation oncology, biology, physics
PURPOSE: Radiation-induced dermatitis is a common side effect of breast radiation therapy (RT). Current methods to evaluate breast skin toxicity include clinical examination, visual inspection, and patient-reported symptoms. Physiological changes ass...

Application of data mining in a cohort of Italian subjects undergoing myocardial perfusion imaging at an academic medical center.

Computer methods and programs in biomedicine
INTRODUCTION: Coronary artery disease (CAD) is still one of the primary causes of death in the developed countries. Stress single-photon emission computed tomography is used to evaluate myocardial perfusion and ventricular function in patients with s...

Semi-supervised learning for automatic segmentation of the knee from MRI with convolutional neural networks.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVE: Segmentation is a crucial step in multiple biomechanics and orthopedics applications. The time-intensiveness and expertise requirements of medical image segmentation present a significant bottleneck for corresponding workflo...

Single-modal and multi-modal false arrhythmia alarm reduction using attention-based convolutional and recurrent neural networks.

PloS one
This study proposes a deep learning model that effectively suppresses the false alarms in the intensive care units (ICUs) without ignoring the true alarms using single- and multi- modal biosignals. Most of the current work in the literature are eithe...

Deep-Channel uses deep neural networks to detect single-molecule events from patch-clamp data.

Communications biology
Single-molecule research techniques such as patch-clamp electrophysiology deliver unique biological insight by capturing the movement of individual proteins in real time, unobscured by whole-cell ensemble averaging. The critical first step in analysi...

Evolving knowledge graph similarity for supervised learning in complex biomedical domains.

BMC bioinformatics
BACKGROUND: In recent years, biomedical ontologies have become important for describing existing biological knowledge in the form of knowledge graphs. Data mining approaches that work with knowledge graphs have been proposed, but they are based on ve...

PGxCorpus, a manually annotated corpus for pharmacogenomics.

Scientific data
Pharmacogenomics (PGx) studies how individual gene variations impact drug response phenotypes, which makes PGx-related knowledge a key component towards precision medicine. A significant part of the state-of-the-art knowledge in PGx is accumulated in...

Semi-Supervised Learning for Semantic Segmentation of Emphysema With Partial Annotations.

IEEE journal of biomedical and health informatics
Segmentation and quantification of each subtype of emphysema is helpful to monitor chronic obstructive pulmonary disease. Due to the nature of emphysema (diffuse pulmonary disease), it is very difficult for experts to allocate semantic labels to ever...