AIMC Topic: Database Management Systems

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1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Nature biotechnology
We present 1,003 reference genomes that were sequenced as part of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative, selected to maximize sequence coverage of phylogenetic space. These genomes double the number of existing type strai...

Big Data and Machine Learning-Strategies for Driving This Bus: A Summary of the 2016 Intersociety Summer Conference.

Journal of the American College of Radiology : JACR
The 38th radiology Intersociety Committee reviewed the current state and future direction of clinical data science and its application to radiology practice. The assembled participants discussed the need to use current technology to better generate a...

Advanced literature analysis in a Big Data world.

Annals of the New York Academy of Sciences
Comprehensive data mining of the scientific literature has become an increasing challenge. To address this challenge, Elsevier's Pathway Studio software uses the techniques of natural language processing to systematically extract specific biological ...

Adapting content-based image retrieval techniques for the semantic annotation of medical images.

Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society
The automatic annotation of medical images is a prerequisite for building comprehensive semantic archives that can be used to enhance evidence-based diagnosis, physician education, and biomedical research. Annotation also has important applications i...

Combining Search, Social Media, and Traditional Data Sources to Improve Influenza Surveillance.

PLoS computational biology
We present a machine learning-based methodology capable of providing real-time ("nowcast") and forecast estimates of influenza activity in the US by leveraging data from multiple data sources including: Google searches, Twitter microblogs, nearly rea...

Building integrated ontological knowledge structures with efficient approximation algorithms.

BioMed research international
The integration of ontologies builds knowledge structures which brings new understanding on existing terminologies and their associations. With the steady increase in the number of ontologies, automatic integration of ontologies is preferable over ma...

ProCon - PROteomics CONversion tool.

Journal of proteomics
With the growing amount of experimental data produced in proteomics experiments and the requirements/recommendations of journals in the proteomics field to publicly make available data described in papers, a need for long-term storage of proteomics d...

Genome Modeling System: A Knowledge Management Platform for Genomics.

PLoS computational biology
In this work, we present the Genome Modeling System (GMS), an analysis information management system capable of executing automated genome analysis pipelines at a massive scale. The GMS framework provides detailed tracking of samples and data coupled...