AIMC Topic: Deep Learning

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Identifying Cancer-Specific circRNA-RBP Binding Sites Based on Deep Learning.

Molecules (Basel, Switzerland)
Circular RNAs (circRNAs) are extensively expressed in cells and tissues, and play crucial roles in human diseases and biological processes. Recent studies have reported that circRNAs could function as RNA binding protein (RBP) sponges, meanwhile RBPs...

Characterization and Identification of Lysine Succinylation Sites based on Deep Learning Method.

Scientific reports
Succinylation is a type of protein post-translational modification (PTM), which can play important roles in a variety of cellular processes. Due to an increasing number of site-specific succinylated peptides obtained from high-throughput mass spectro...

Object detection and recognition: using deep learning to assist the visually impaired.

Disability and rehabilitation. Assistive technology
BACKGROUND: Deep learning systems have improved performance of devices through more accurate object detection in a significant number of areas, for medical aid in general, and also for navigational aids for the visually impaired. Systems addressing d...

Detecting motorcycle helmet use with deep learning.

Accident; analysis and prevention
The continuous motorization of traffic has led to a sustained increase in the global number of road related fatalities and injuries. To counter this, governments are focusing on enforcing safe and law-abiding behavior in traffic. However, especially ...

De novo Nanopore read quality improvement using deep learning.

BMC bioinformatics
BACKGROUND: Long read sequencing technologies such as Oxford Nanopore can greatly decrease the complexity of de novo genome assembly and large structural variation identification. Currently Nanopore reads have high error rates, and the errors often c...

SpCas9 activity prediction by DeepSpCas9, a deep learning-based model with high generalization performance.

Science advances
We evaluated SpCas9 activities at 12,832 target sequences using a high-throughput approach based on a human cell library containing single-guide RNA-encoding and target sequence pairs. Deep learning-based training on this large dataset of SpCas9-indu...

Current and future applications of machine and deep learning in urology: a review of the literature on urolithiasis, renal cell carcinoma, and bladder and prostate cancer.

World journal of urology
PURPOSE: The purpose of the study was to provide a comprehensive review of recent machine learning (ML) and deep learning (DL) applications in urological practice. Numerous studies have reported their use in the medical care of various urological dis...

A Deep Learning Approach for Detecting Copy Number Variation in Next-Generation Sequencing Data.

G3 (Bethesda, Md.)
Copy number variants (CNV) are associated with phenotypic variation in several species. However, properly detecting changes in copy numbers of sequences remains a difficult problem, especially in lower quality or lower coverage next-generation sequen...

Comparing lesion segmentation methods in multiple sclerosis: Input from one manually delineated subject is sufficient for accurate lesion segmentation.

NeuroImage. Clinical
PURPOSE: Accurate lesion segmentation is important for measurements of lesion load and atrophy in subjects with multiple sclerosis (MS). International MS lesion challenges show a preference of convolutional neural networks (CNN) strategies, such as n...