AIMC Topic: Flow Cytometry

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Machine Learning Models Improve the Diagnostic Yield of Peripheral Blood Flow Cytometry.

American journal of clinical pathology
OBJECTIVES: Peripheral blood flow cytometry (PBFC) is useful for evaluating circulating hematologic malignancies (HM) but has limited diagnostic value for screening. We used machine learning to evaluate whether clinical history and CBC/differential p...

Label-free optical hemogram of granulocytes enhanced by artificial neural networks.

Optics express
An outstanding challenge for immunology is the classification of immune cells in a label-free fashion with high speed. For this purpose, optical techniques such as Raman spectroscopy or digital holographic microscopy have been used successfully to id...

Supervised Machine Learning with CITRUS for Single Cell Biomarker Discovery.

Methods in molecular biology (Clifton, N.J.)
CITRUS is a supervised machine learning algorithm designed to analyze single cell data, identify cell populations, and identify changes in the frequencies or functional marker expression patterns of those populations that are significantly associated...

[Expression of follicular helper T cells in peripheral blood of patients with hepatic echinococcosis].

Zhongguo xue xi chong bing fang zhi za zhi = Chinese journal of schistosomiasis control
OBJECTIVE: To detect the expression of follicuLar helper T cells (Tfh) and interleukin-21 (IL-21) in the peripheral blood of patients with hepatic echinococcosis and healthy controls, so as to explore the associations of Tfh and IL-21 expression with...

Feasibility study of stain-free classification of cell apoptosis based on diffraction imaging flow cytometry and supervised machine learning techniques.

Apoptosis : an international journal on programmed cell death
This study was to explore the feasibility of prediction and classification of cells in different stages of apoptosis with a stain-free method based on diffraction images and supervised machine learning. Apoptosis was induced in human chronic myelogen...

Investigating the Generalizability of the MultiFlow ® DNA Damage Assay and Several Companion Machine Learning Models With a Set of 103 Diverse Test Chemicals.

Toxicological sciences : an official journal of the Society of Toxicology
The in vitro MultiFlow DNA Damage assay multiplexes p53, γH2AX, phospho-histone H3, and polyploidization biomarkers into 1 flow cytometric analysis (Bryce, S. M., Bernacki, D. T., Bemis, J. C., and Dertinger, S. D. (2016). Genotoxic mode of action pr...

Gating mass cytometry data by deep learning.

Bioinformatics (Oxford, England)
MOTIVATION: Mass cytometry or CyTOF is an emerging technology for high-dimensional multiparameter single cell analysis that overcomes many limitations of fluorescence-based flow cytometry. New methods for analyzing CyTOF data attempt to improve autom...

CellSort: a support vector machine tool for optimizing fluorescence-activated cell sorting and reducing experimental effort.

Bioinformatics (Oxford, England)
MOTIVATION: High throughput screening by fluorescence activated cell sorting (FACS) is a common task in protein engineering and directed evolution. It can also be a rate-limiting step if high false positive or negative rates necessitate multiple roun...

High-throughput time-stretch imaging flow cytometry for multi-class classification of phytoplankton.

Optics express
Time-stretch imaging has been regarded as an attractive technique for high-throughput imaging flow cytometry primarily owing to its real-time, continuous ultrafast operation. Nevertheless, two key challenges remain: (1) sufficiently high time-stretch...

Automated analysis of acute myeloid leukemia minimal residual disease using a support vector machine.

Oncotarget
We investigated the ability of support vector machines (SVM) to analyze minimal residual disease (MRD) in flow cytometry data from patients with acute myeloid leukemia (AML) automatically, objectively and standardly. The initial disease data and MRD ...