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Gene-Environment Interaction

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AsthmaKGxE: An asthma-environment interaction knowledge graph leveraging public databases and scientific literature.

Computers in biology and medicine
MOTIVATION: Asthma is a complex heterogeneous disease resulting from intricate interactions between genetic and non-genetic factors related to environmental and psychosocial aspects. Discovery of such interactions can provide insights into the pathop...

Dynamic parameter identification and adaptive control with trajectory scaling for robot-environment interaction.

PloS one
To improve the force/position control performance of robots in contact with the environment, this paper proposes a control scheme comprising dynamic parameter identification, trajectory scaling, and computed-torque control based on adaptive parameter...

Gene-environment interaction analysis via deep learning.

Genetic epidemiology
Gene-environment (G-E) interaction analysis plays an important role in studying complex diseases. Extensive methodological research has been conducted on G-E interaction analysis, and the existing methods are mostly based on regression techniques. In...

Classifying Alzheimer's disease and normal subjects using machine learning techniques and genetic-environmental features.

Journal of the Formosan Medical Association = Taiwan yi zhi
BACKGROUND: Alzheimer's disease (AD) is complicated by multiple environmental and polygenetic factors. The accuracy of artificial neural networks (ANNs) incorporating the common factors for identifying AD has not been evaluated.

Residual networks without pooling layers improve the accuracy of genomic predictions.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
Residual neural network genomic selection is the first GS algorithm to reach 35 layers, and its prediction accuracy surpasses previous algorithms. With the decrease in DNA sequencing costs and the development of deep learning, phenotype prediction ac...

Using machine learning to combine genetic and environmental data for maize grain yield predictions across multi-environment trials.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
Incorporating feature-engineered environmental data into machine learning-based genomic prediction models is an efficient approach to indirectly model genotype-by-environment interactions. Complementing phenotypic traits and molecular markers with hi...

Data-driven discovery of the interplay between genetic and environmental factors in bacterial growth.

Communications biology
A complex interplay of genetic and environmental factors influences bacterial growth. Understanding these interactions is crucial for insights into complex living systems. This study employs a data-driven approach to uncover the principles governing ...

Machine learning algorithms translate big data into predictive breeding accuracy.

Trends in plant science
Statistical machine learning (ML) extracts patterns from extensive genomic, phenotypic, and environmental data. ML algorithms automatically identify relevant features and use cross-validation to ensure robust models and improve prediction reliability...

Leveraging Automated Machine Learning for Environmental Data-Driven Genetic Analysis and Genomic Prediction in Maize Hybrids.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)
Genotype, environment, and genotype-by-environment (G×E) interactions play a critical role in shaping crop phenotypes. Here, a large-scale, multi-environment hybrid maize dataset is used to construct and validate an automated machine learning framewo...