AI Medical Compendium Topic

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Genomics

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A disease network-based deep learning approach for characterizing melanoma.

International journal of cancer
Multiple types of genomic variations are present in cutaneous melanoma and some of the genomic features may have an impact on the prognosis of the disease. The access to genomics data via public repositories such as The Cancer Genome Atlas (TCGA) all...

Deep Learning of the Retina Enables Phenome- and Genome-Wide Analyses of the Microvasculature.

Circulation
BACKGROUND: The microvasculature, the smallest blood vessels in the body, has key roles in maintenance of organ health and tumorigenesis. The retinal fundus is a window for human in vivo noninvasive assessment of the microvasculature. Large-scale com...

Cancer survival prognosis with Deep Bayesian Perturbation Cox Network.

Computers in biology and medicine
BACKGROUND: The Cox proportional hazards model with neural networks is widely used to accurately predict survival outcome for choosing cancer treatment strategies. Although this method has shown outstanding performance in many tasks, it has encounter...

The promise of automated machine learning for the genetic analysis of complex traits.

Human genetics
The genetic analysis of complex traits has been dominated by parametric statistical methods due to their theoretical properties, ease of use, computational efficiency, and intuitive interpretation. However, there are likely to be patterns arising fro...

Interpretable machine learning for genomics.

Human genetics
High-throughput technologies such as next-generation sequencing allow biologists to observe cell function with unprecedented resolution, but the resulting datasets are too large and complicated for humans to understand without the aid of advanced sta...

Artificial intelligence enables comprehensive genome interpretation and nomination of candidate diagnoses for rare genetic diseases.

Genome medicine
BACKGROUND: Clinical interpretation of genetic variants in the context of the patient's phenotype is becoming the largest component of cost and time expenditure for genome-based diagnosis of rare genetic diseases. Artificial intelligence (AI) holds p...

Enhancing breakpoint resolution with deep segmentation model: A general refinement method for read-depth based structural variant callers.

PLoS computational biology
Read-depths (RDs) are frequently used in identifying structural variants (SVs) from sequencing data. For existing RD-based SV callers, it is difficult for them to determine breakpoints in single-nucleotide resolution due to the noisiness of RD data a...

Effective gene expression prediction from sequence by integrating long-range interactions.

Nature methods
How noncoding DNA determines gene expression in different cell types is a major unsolved problem, and critical downstream applications in human genetics depend on improved solutions. Here, we report substantially improved gene expression prediction a...

Advances in for Abiotic Stress Resilience: From 'Omics' to Artificial Intelligence.

International journal of molecular sciences
Legumes are a better source of proteins and are richer in diverse micronutrients over the nutritional profile of widely consumed cereals. However, when exposed to a diverse range of abiotic stresses, their overall productivity and quality are hugely ...

Deep learning in cancer diagnosis, prognosis and treatment selection.

Genome medicine
Deep learning is a subdiscipline of artificial intelligence that uses a machine learning technique called artificial neural networks to extract patterns and make predictions from large data sets. The increasing adoption of deep learning across health...