AIMC Topic: Genomics

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Iterative improvement of deep learning models using synthetic regulatory genomics.

Genome research
Deep learning models can accurately reconstruct genome-wide epigenetic tracks from the reference genome sequence alone. But it is unclear what predictive power they have on sequence diverging from the reference, such as disease- and trait-associated ...

A novel modality contribution confidence-enhanced multimodal deep learning framework for multiomics data.

BMC bioinformatics
Multimodal learning for classification tasks has recently gained significant attention in bioinformatics. Current approaches primarily concentrate on devising efficient deep learning architectures to capture features within and across modalities. How...

Artificial intelligence in cancer: applications, challenges, and future perspectives.

Molecular cancer
Artificial intelligence (AI) is rapidly revolutionizing the landscape of oncological research and the advancement of personalized clinical interventions. Progress in three interconnected areas, including the development of methods and algorithms for ...

Integrative Deep Learning of Genomic and Clinical Data for Predicting Treatment Response in Newly Diagnosed Epilepsy.

Neurology
BACKGROUND AND OBJECTIVES: Epilepsy is a common neurologic disorder. Although antiseizure medications (ASMs) are the first-line treatment, identifying the most effective ASM for each individual remains a trial-and-error process. Genetic variation may...

Transformative advances in single-cell omics: a comprehensive review of foundation models, multimodal integration and computational ecosystems.

Journal of translational medicine
Recent advances in single-cell multi-omics technologies have revolutionized cellular analysis, enabling comprehensive exploration of cellular heterogeneity, developmental trajectories, and disease mechanisms at unprecedented resolution. Foundation mo...

Decoding herbal medicine: AI-powered omics and network pharmacology.

Phytomedicine : international journal of phytotherapy and phytopharmacology
BACKGROUND: As global health challenges continue to evolve, herbal medicines (HMs) have garnered significant scientific interest as a valuable resource for treating complex diseases. However, the chemical complexity of HMs presents considerable chall...

EasyGeSe - a resource for benchmarking genomic prediction methods.

BMC genomics
BACKGROUND: Genomic prediction is a widely used method to predict phenotypes from genotypic data. Advances in both biological and computer science have enabled the generation of vast amounts of data and the development of new algorithms, specifically...

Harnessing multi-omics and genome-editing technologies for climate-resilient agriculture: bridging AI-driven insights with sustainable crop improvement.

Plant molecular biology
Environmental challenges such as drought, salinity, heavy metal contamination, and nutrient deficiencies threaten global agricultural productivity and food security. These stressors drastically reduce crop yields, necessitating innovative solutions. ...

A comparative study highlights superiority of LSTM in crop genomic prediction.

Planta
We systematically evaluated three key determinants affecting prediction accuracy and the algorithm performance differences based on fifteen state-of-the-art GP methods, and found LSTM suitable for capturing additive and epistatic effects. Genomic pre...

Multimodal prediction of metastatic relapse using federated deep learning in soft-tissue sarcoma with a complex genomic profile.

Scientific reports
Soft Tissue sarcomas (STS) are a group of heterogeneous and complex diseases where being able to predict the appearance of metastases is key to inform clinical decisions, especially the prescription of adjuvant chemotherapy. We developed SarcNet: a m...