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Using deep convolutional neural networks to identify and classify tumor-associated stroma in diagnostic breast biopsies.

Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc
The breast stromal microenvironment is a pivotal factor in breast cancer development, growth and metastases. Although pathologists often detect morphologic changes in stroma by light microscopy, visual classification of such changes is subjective and...

Peripheral bronchial identification on chest CT using unsupervised machine learning.

International journal of computer assisted radiology and surgery
PURPOSE: To automatically identify small- to medium-diameter bronchial segments distributed throughout the lungs.

Classifying the molecular functions of Rab GTPases in membrane trafficking using deep convolutional neural networks.

Analytical biochemistry
Deep learning has been increasingly used to solve a number of problems with state-of-the-art performance in a wide variety of fields. In biology, deep learning can be applied to reduce feature extraction time and achieve high levels of performance. I...

Machine learning algorithms for outcome prediction in (chemo)radiotherapy: An empirical comparison of classifiers.

Medical physics
PURPOSE: Machine learning classification algorithms (classifiers) for prediction of treatment response are becoming more popular in radiotherapy literature. General Machine learning literature provides evidence in favor of some classifier families (r...
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PrESOgenesis: A two-layer multi-label predictor for identifying fertility-related proteins using support vector machine and pseudo amino acid composition approach.

Scientific reports
Successful spermatogenesis and oogenesis are the two genetically independent processes preceding embryo development. To date, several fertility-related proteins have been described in mammalian species. Nevertheless, further studies are required to d...
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Identifying tweets of personal health experience through word embedding and LSTM neural network.

BMC bioinformatics
BACKGROUND: As Twitter has become an active data source for health surveillance research, it is important that efficient and effective methods are developed to identify tweets related to personal health experience. Conventional classification algorit...

Semi-Supervised Recurrent Neural Network for Adverse Drug Reaction mention extraction.

BMC bioinformatics
BACKGROUND: Social media is a useful platform to share health-related information due to its vast reach. This makes it a good candidate for public-health monitoring tasks, specifically for pharmacovigilance. We study the problem of extraction of Adve...

Attenuation correction for brain PET imaging using deep neural network based on Dixon and ZTE MR images.

Physics in medicine and biology
Positron emission tomography (PET) is a functional imaging modality widely used in neuroscience studies. To obtain meaningful quantitative results from PET images, attenuation correction is necessary during image reconstruction. For PET/MR hybrid sys...

Artificial Intelligence: Bayesian versus Heuristic Method for Diagnostic Decision Support.

Applied clinical informatics
Evoking strength is one of the important contributions of the field of Biomedical Informatics to the discipline of Artificial Intelligence. The University at Buffalo's Orthopedics Department wanted to create an expert system to assist patients with s...