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Immunotherapy

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pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens.

Cancer immunology research
Identification of neoantigens is a critical step in predicting response to checkpoint blockade therapy and design of personalized cancer vaccines. This is a cross-disciplinary challenge, involving genomics, proteomics, immunology, and computational a...

Future of Radiotherapy in Nasopharyngeal Carcinoma.

The British journal of radiology
Nasopharyngeal carcinoma (NPC) is a malignancy with unique clinical biological profiles such as associated Epstein-Barr virus infection and high radiosensitivity. Radiotherapy has long been recognized as the mainstay for the treatment of NPC. However...

IAPSO-AIRS: A novel improved machine learning-based system for wart disease treatment.

Journal of medical systems
Wart disease (WD) is a skin illness on the human body which is caused by the human papillomavirus (HPV). This study mainly concentrates on common and plantar warts. There are various treatment methods for this disease, including the popular immunothe...

Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer.

Nature medicine
Microsatellite instability determines whether patients with gastrointestinal cancer respond exceptionally well to immunotherapy. However, in clinical practice, not every patient is tested for MSI, because this requires additional genetic or immunohis...

Level of neo-epitope predecessor and mutation type determine T cell activation of MHC binding peptides.

Journal for immunotherapy of cancer
BACKGROUND: Targeting epitopes derived from neo-antigens (or "neo-epitopes") represents a promising immunotherapy approach with limited off-target effects. However, most peptides predicted using MHC binding prediction algorithms do not induce a CD8 +...

Reinforcement learning-based control of tumor growth under anti-angiogenic therapy.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVES: In recent decades, cancer has become one of the most fatal and destructive diseases which is threatening humans life. Accordingly, different types of cancer treatment are studied with the main aim to have the best treatment...

PIP-EL: A New Ensemble Learning Method for Improved Proinflammatory Peptide Predictions.

Frontiers in immunology
Proinflammatory cytokines have the capacity to increase inflammatory reaction and play a central role in first line of defence against invading pathogens. Proinflammatory inducing peptides (PIPs) have been used as an antineoplastic agent, an antibact...

Role of artificial intelligence in the care of patients with nonsmall cell lung cancer.

European journal of clinical investigation
BACKGROUND: Lung cancer is the leading cause of cancer death worldwide. In up to 57% of patients, it is diagnosed at an advanced stage and the 5-year survival rate ranges between 10%-16%. There has been a significant amount of research using machine ...

Vitamin D deficiency and supplementation in patients with aggressive B-cell lymphomas treated with immunochemotherapy.

Cancer medicine
Vitamin D deficiency has been reported to be a negative prognostic factor in elderly patients with aggressive B-cell lymphomas. In vitro data suggest that vitamin D supplementation may enhance rituximab-mediated cytotoxicity. We prospectively assesse...