AIMC Topic: Mice

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DDeep3M: Docker-powered deep learning for biomedical image segmentation.

Journal of neuroscience methods
BACKGROUND: Deep learning models are turning out to be increasingly popular in biomedical image processing. The fruitful utilization of these models, in most cases, is substantially restricted by the complicated configuration of computational environ...

Automated Recognition of Retinal Pigment Epithelium Cells on Limited Training Samples Using Neural Networks.

Translational vision science & technology
PURPOSE: To develop a neural network (NN)-based approach, with limited training resources, that identifies and counts the number of retinal pigment epithelium (RPE) cells in confocal microscopy images obtained from cell culture or mice RPE/choroid fl...

Real-Time Selective Markerless Tracking of Forepaws of Head Fixed Mice Using Deep Neural Networks.

eNeuro
Here, we describe a system capable of tracking specific mouse paw movements at high frame rates (70.17 Hz) with a high level of accuracy (mean=0.95, SD<0.01). Short-latency markerless tracking of specific body parts opens up the possibility of manipu...

Prediction of Protein-Protein Interactions with Local Weight-Sharing Mechanism in Deep Learning.

BioMed research international
Protein-protein interactions (PPIs) are important for almost all cellular processes, including metabolic cycles, DNA transcription and replication, and signaling cascades. The experimental methods for identifying PPIs are always time-consuming and ex...

Determinants of Base Editing Outcomes from Target Library Analysis and Machine Learning.

Cell
Although base editors are widely used to install targeted point mutations, the factors that determine base editing outcomes are not well understood. We characterized sequence-activity relationships of 11 cytosine and adenine base editors (CBEs and AB...

High-quality photoacoustic image reconstruction based on deep convolutional neural network: towards intra-operative photoacoustic imaging.

Biomedical physics & engineering express
The use of intra-operative imaging system as an intervention solution to provide more accurate localization of complicated structures has become a necessity during the neurosurgery. However, due to the limitations of conventional imaging systems, hig...

Distinct signals in medial and lateral VTA dopamine neurons modulate fear extinction at different times.

eLife
Dopamine (DA) neurons are to encode reward prediction error (RPE), in addition to other signals, such as salience. While RPE is known to support learning, the role of salience in learning remains less clear. To address this, we recorded and manipulat...

A Coupled FEM-SPH Modeling Technique to Investigate the Contractility of Biohybrid Thin Films.

Advanced biosystems
Biohybrid actuators have the potential to overcome the limitations of traditional actuators employed in robotics, thanks to the unique features of living contractile muscle cells, which can be used to power artificial elements. This paper describes a...

Utilization of a Deep Learning Algorithm for Microscope-Based Fatty Vacuole Quantification in a Fatty Liver Model in Mice.

Toxicologic pathology
Quantification of fatty vacuoles in the liver, with differentiation from lumina of liver blood vessels and bile ducts, is an example where the traditional semiquantitative pathology assessment can be enhanced with artificial intelligence (AI) algorit...