AIMC Topic: MicroRNAs

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miRNAs expression pattern and machine learning models elucidate risk for gastric GIST.

Cancer biomarkers : section A of Disease markers
BACKGROUND: Gatrointestinal stromal tumors (GISTs) are the main mesenchymal tumors found in the gastrointestinal system. GISTs clinical phenotypes differ significantly and their molecular basis is not yet completely known. microRNAs (miRNAs) have bee...

Elucidation of dynamic microRNA regulations in cancer progression using integrative machine learning.

Briefings in bioinformatics
MOTIVATION: Empowered by advanced genomics discovery tools, recent biomedical research has produced a massive amount of genomic data on (post-)transcriptional regulations related to transcription factors, microRNAs, long non-coding RNAs, epigenetic m...

Multi-view Multichannel Attention Graph Convolutional Network for miRNA-disease association prediction.

Briefings in bioinformatics
MOTIVATION: In recent years, a growing number of studies have proved that microRNAs (miRNAs) play significant roles in the development of human complex diseases. Discovering the associations between miRNAs and diseases has become an important part of...

NMCMDA: neural multicategory MiRNA-disease association prediction.

Briefings in bioinformatics
MOTIVATION: There is growing evidence showing that the dysregulations of miRNAs cause diseases through various kinds of the underlying mechanism. Thus, predicting the multiple-category associations between microRNAs (miRNAs) and diseases plays an imp...

GAERF: predicting lncRNA-disease associations by graph auto-encoder and random forest.

Briefings in bioinformatics
Predicting disease-related long non-coding RNAs (lncRNAs) is beneficial to finding of new biomarkers for prevention, diagnosis and treatment of complex human diseases. In this paper, we proposed a machine learning techniques-based classification appr...

A graph auto-encoder model for miRNA-disease associations prediction.

Briefings in bioinformatics
Emerging evidence indicates that the abnormal expression of miRNAs involves in the evolution and progression of various human complex diseases. Identifying disease-related miRNAs as new biomarkers can promote the development of disease pathology and ...

A comprehensive survey on computational methods of non-coding RNA and disease association prediction.

Briefings in bioinformatics
The studies on relationships between non-coding RNAs and diseases are widely carried out in recent years. A large number of experimental methods and technologies of producing biological data have also been developed. However, due to their high labor ...

Prognostic outcome prediction by semi-supervised least squares classification.

Briefings in bioinformatics
Although great progress has been made in prognostic outcome prediction, small sample size remains a challenge in obtaining accurate and robust classifiers. We proposed the Rescaled linear square Regression based Least Squares Learning (RRLSL), a join...

Genome-wide discovery of pre-miRNAs: comparison of recent approaches based on machine learning.

Briefings in bioinformatics
MOTIVATION: The genome-wide discovery of microRNAs (miRNAs) involves identifying sequences having the highest chance of being a novel miRNA precursor (pre-miRNA), within all the possible sequences in a complete genome. The known pre-miRNAs are usuall...

Predicting microRNA-disease associations from lncRNA-microRNA interactions via Multiview Multitask Learning.

Briefings in bioinformatics
MOTIVATION: Identifying microRNAs that are associated with different diseases as biomarkers is a problem of great medical significance. Existing computational methods for uncovering such microRNA-diseases associations (MDAs) are mostly developed unde...