AIMC Topic: Neural Networks, Computer

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Deep learning model for protein multi-label subcellular localization and function prediction based on multi-task collaborative training.

Briefings in bioinformatics
The functional study of proteins is a critical task in modern biology, playing a pivotal role in understanding the mechanisms of pathogenesis, developing new drugs, and discovering novel drug targets. However, existing computational models for subcel...

Multi-view learning framework for predicting unknown types of cancer markers via directed graph neural networks fitting regulatory networks.

Briefings in bioinformatics
The discovery of diagnostic and therapeutic biomarkers for complex diseases, especially cancer, has always been a central and long-term challenge in molecular association prediction research, offering promising avenues for advancing the understanding...

Structure-preserved integration of scRNA-seq data using heterogeneous graph neural network.

Briefings in bioinformatics
The integration of single-cell RNA sequencing (scRNA-seq) data from multiple experimental batches enables more comprehensive characterizations of cell states. Given that existing methods disregard the structural information between cells and genes, w...

A two-task predictor for discovering phase separation proteins and their undergoing mechanism.

Briefings in bioinformatics
Liquid-liquid phase separation (LLPS) is one of the mechanisms mediating the compartmentalization of macromolecules (proteins and nucleic acids) in cells, forming biomolecular condensates or membraneless organelles. Consequently, the systematic ident...

Gene expression prediction from histology images via hypergraph neural networks.

Briefings in bioinformatics
Spatial transcriptomics reveals the spatial distribution of genes in complex tissues, providing crucial insights into biological processes, disease mechanisms, and drug development. The prediction of gene expression based on cost-effective histology ...

[Applications of artificial intelligence for imaging-driven diagnosis and treatment of bone and soft tissue tumors].

Zhonghua zhong liu za zhi [Chinese journal of oncology]
Bone and soft tissue tumors occur in the musculoskeletal system, and malignant bone tumors of bone and soft tissue account for 0.2% of all human malignant tumors, and if not diagnosed and treated in a timely manner, patients may be at risk of a poor ...

[An autoencoder model based on one-dimensional neural network for epileptic EEG anomaly detection].

Nan fang yi ke da xue xue bao = Journal of Southern Medical University
OBJECTIVE: We propose an autoencoder model based on a one-dimensional convolutional neural network (1DCNN) as the feature extraction network for efficient detection of epileptic EEG anomalies.

Trainable Reference Spikes Improve Temporal Information Processing of SNNs With Supervised Learning.

Neural computation
Spiking neural networks (SNNs) are the next-generation neural networks composed of biologically plausible neurons that communicate through trains of spikes. By modifying the plastic parameters of SNNs, including weights and time delays, SNNs can be t...

Inference on the Macroscopic Dynamics of Spiking Neurons.

Neural computation
The process of inference on networks of spiking neurons is essential to decipher the underlying mechanisms of brain computation and function. In this study, we conduct inference on parameters and dynamics of a mean-field approximation, simplifying th...