AIMC Topic: Neural Networks, Computer

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Biological network analysis with deep learning.

Briefings in bioinformatics
Recent advancements in experimental high-throughput technologies have expanded the availability and quantity of molecular data in biology. Given the importance of interactions in biological processes, such as the interactions between proteins or the ...

Identifying drug-target interactions based on graph convolutional network and deep neural network.

Briefings in bioinformatics
Identification of new drug-target interactions (DTIs) is an important but a time-consuming and costly step in drug discovery. In recent years, to mitigate these drawbacks, researchers have sought to identify DTIs using computational approaches. Howev...

Application of deep learning methods in biological networks.

Briefings in bioinformatics
The increase in biological data and the formation of various biomolecule interaction databases enable us to obtain diverse biological networks. These biological networks provide a wealth of raw materials for further understanding of biological system...

Deep learning for biological age estimation.

Briefings in bioinformatics
Modern machine learning techniques (such as deep learning) offer immense opportunities in the field of human biological aging research. Aging is a complex process, experienced by all living organisms. While traditional machine learning and data minin...

Prediction of drug adverse events using deep learning in pharmaceutical discovery.

Briefings in bioinformatics
Traditional machine learning methods used to detect the side effects of drugs pose significant challenges as feature engineering processes are labor-intensive, expert-dependent, time-consuming and cost-ineffective. Moreover, these methods only focus ...

Integrating multi-network topology for gene function prediction using deep neural networks.

Briefings in bioinformatics
MOTIVATION: The emergence of abundant biological networks, which benefit from the development of advanced high-throughput techniques, contributes to describing and modeling complex internal interactions among biological entities such as genes and pro...

DeepCPP: a deep neural network based on nucleotide bias information and minimum distribution similarity feature selection for RNA coding potential prediction.

Briefings in bioinformatics
The development of deep sequencing technologies has led to the discovery of novel transcripts. Many in silico methods have been developed to assess the coding potential of these transcripts to further investigate their functions. Existing methods per...

Biological applications of knowledge graph embedding models.

Briefings in bioinformatics
Complex biological systems are traditionally modelled as graphs of interconnected biological entities. These graphs, i.e. biological knowledge graphs, are then processed using graph exploratory approaches to perform different types of analytical and ...

Importance-aware personalized learning for early risk prediction using static and dynamic health data.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Accurate risk prediction is important for evaluating early medical treatment effects and improving health care quality. Existing methods are usually designed for dynamic medical data, which require long-term observations. Meanwhile, import...