AIMC Topic: RNA, Long Noncoding

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TADKB: Family classification and a knowledge base of topologically associating domains.

BMC genomics
BACKGROUND: Topologically associating domains (TADs) are considered the structural and functional units of the genome. However, there is a lack of an integrated resource for TADs in the literature where researchers can obtain family classifications a...

RPITER: A Hierarchical Deep Learning Framework for ncRNA⁻Protein Interaction Prediction.

International journal of molecular sciences
Non-coding RNAs (ncRNAs) play crucial roles in multiple fundamental biological processes, such as post-transcriptional gene regulation, and are implicated in many complex human diseases. Mostly ncRNAs function by interacting with corresponding RNA-bi...

CRlncRC: a machine learning-based method for cancer-related long noncoding RNA identification using integrated features.

BMC medical genomics
BACKGROUND: Long noncoding RNAs (lncRNAs) are widely involved in the initiation and development of cancer. Although some computational methods have been proposed to identify cancer-related lncRNAs, there is still a demanding to improve the prediction...

SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions.

PLoS computational biology
LncRNA-protein interactions play important roles in post-transcriptional gene regulation, poly-adenylation, splicing and translation. Identification of lncRNA-protein interactions helps to understand lncRNA-related activities. Existing computational ...

Deep learning identifies genome-wide DNA binding sites of long noncoding RNAs.

RNA biology
Long noncoding RNAs (lncRNAs) can exert their function by interacting with the DNA via triplex structure formation. Even though this has been validated with a handful of experiments, a genome-wide analysis of lncRNA-DNA binding is needed. In this pap...

Gene Ontology-based function prediction of long non-coding RNAs using bi-random walk.

BMC medical genomics
BACKGROUND: With the development of sequencing technology, more and more long non-coding RNAs (lncRNAs) have been identified. Some lncRNAs have been confirmed that they play an important role in the process of development through the dosage compensat...

Prediction of LncRNA Subcellular Localization with Deep Learning from Sequence Features.

Scientific reports
Long non-coding RNAs are involved in biological processes throughout the cell including the nucleus, chromatin and cytosol. However, most lncRNAs remain unannotated and functional annotation of lncRNAs is difficult due to their low conservation and t...

Accurate prediction of protein-lncRNA interactions by diffusion and HeteSim features across heterogeneous network.

BMC bioinformatics
BACKGROUND: Identifying the interactions between proteins and long non-coding RNAs (lncRNAs) is of great importance to decipher the functional mechanisms of lncRNAs. However, current experimental techniques for detection of lncRNA-protein interaction...

Data mining of the cancer-related lncRNAs GO terms and KEGG pathways by using mRMR method.

Mathematical biosciences
LncRNAs plays an important role in the regulation of gene expression. Identification of cancer-related lncRNAs GO terms and KEGG pathways is great helpful for revealing cancer-related functional biological processes. Therefore, in this study, we prop...

Identification of 170 New Long Noncoding RNAs in .

BioMed research international
Long noncoding RNAs (lncRNAs) are transcripts generally longer than 200 nucleotides with no or poor protein coding potential, and most of their functions are also poorly characterized. Recently, an increasing number of studies have shown that lncRNAs...