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Sequence Analysis, DNA

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AUCpreD: proteome-level protein disorder prediction by AUC-maximized deep convolutional neural fields.

Bioinformatics (Oxford, England)
MOTIVATION: Protein intrinsically disordered regions (IDRs) play an important role in many biological processes. Two key properties of IDRs are (i) the occurrence is proteome-wide and (ii) the ratio of disordered residues is about 6%, which makes it ...

GI-SVM: A sensitive method for predicting genomic islands based on unannotated sequence of a single genome.

Journal of bioinformatics and computational biology
Genomic islands (GIs) are clusters of functionally related genes acquired by lateral genetic transfer (LGT), and they are present in many bacterial genomes. GIs are extremely important for bacterial research, because they not only promote genome evol...