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Machine learning classifiers can predict Gleason pattern 4 prostate cancer with greater accuracy than experienced radiologists.

European radiology
OBJECTIVE: The purpose of this study was: To test whether machine learning classifiers for transition zone (TZ) and peripheral zone (PZ) can correctly classify prostate tumors into those with/without a Gleason 4 component, and to compare the performa...

Using Machine Learning Algorithms to Predict Hepatitis B Surface Antigen Seroclearance.

Computational and mathematical methods in medicine
Hepatitis B surface antigen (HBsAg) seroclearance during treatment is associated with a better prognosis among patients with chronic hepatitis B (CHB). Significant gaps remain in our understanding on how to predict HBsAg seroclearance accurately and ...

Distant supervision for treatment relation extraction by leveraging MeSH subheadings.

Artificial intelligence in medicine
The growing body of knowledge in biomedicine is too vast for human consumption. Hence there is a need for automated systems able to navigate and distill the emerging wealth of information. One fundamental task to that end is relation extraction, wher...

A comparative study on feature selection for a risk prediction model for colorectal cancer.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVE: Risk prediction models aim at identifying people at higher risk of developing a target disease. Feature selection is particularly important to improve the prediction model performance avoiding overfitting and to identify the...

Computational determination of hERG-related cardiotoxicity of drug candidates.

BMC bioinformatics
BACKGROUND: Drug candidates often cause an unwanted blockage of the potassium ion channel of the human ether-a-go-go-related gene (hERG). The blockage leads to long QT syndrome (LQTS), which is a severe life-threatening cardiac side effect. Therefore...

MHCSeqNet: a deep neural network model for universal MHC binding prediction.

BMC bioinformatics
BACKGROUND: Immunotherapy is an emerging approach in cancer treatment that activates the host immune system to destroy cancer cells expressing unique peptide signatures (neoepitopes). Administrations of cancer-specific neoepitopes in the form of synt...

Gene shaving using a sensitivity analysis of kernel based machine learning approach, with applications to cancer data.

PloS one
BACKGROUND: Gene shaving (GS) is an essential and challenging tools for biomedical researchers due to the large number of genes in human genome and the complex nature of biological networks. Most GS methods are not applicable to non-linear and multi-...