AIMC Topic: Bacteria

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Urbanization intensifies deterministic selection of pathogenic bacteria in river networks: Nitrogen-driven niche partitioning and cross-scale risk forecasting through DOM-bacteria interplay.

Environmental research
Urbanization modifies the composition of dissolved organic matter (DOM) and nitrogen nutrients, profoundly affecting river microbial communities. However, the mechanisms driving pathogenic and non-pathogenic bacteria remain unclear. In this study, we...

Antimicrobial Peptides Design Using Deep Learning and Rational Modifications: Activity in Bacteria, Candida albicans, and Cancer Cells.

Current microbiology
Resistance to antimicrobial agents has become a global threat, estimated to cause 10-million deaths annually by 2050. Antimicrobial peptides are emerging as an alternative and offer advantages over traditional antibiotics. Antimicrobial peptides gene...

Interpretive prediction of hyperuricemia and gout patients via machine learning analysis of human gut microbiome.

BMC microbiology
Hyperuricemia (HUA) and gout result from imbalances in uric acid metabolism and are closely associated with the gut microbiota. Advanced analytical methods facilitate the exploration of microbiota complexity. In this study, 16S rRNA sequencing data f...

Exploiting the gut microbiota of aquatic animals as indicators of microplastic pollution using interpretable machine learning models.

Journal of hazardous materials
The response of aquatic animal gut microbiota to microplastics has been extensively studied and shows sensitivity, however, the potential of using gut microbiota as indicators for microplastic pollution has not yet been fully explored. To address thi...

Multi-kingdom microbiota analysis reveals bacteria-viral interplay in IBS with depression and anxiety.

NPJ biofilms and microbiomes
Irritable Bowel Syndrome (IBS) is a common gastrointestinal disorder frequently accompanied by psychological symptoms. Bacterial microbiota plays a critical role in mediating local and systemic immunity, and alterations in these microbial communities...

Computational Strategies to Enhance Vitamin B Biosynthesis Potential of Microbes.

Current microbiology
Vitamin B is a vital nutrient for the normal functioning of many metabolic processes. It has a characteristic corrinoid ring structure with a cobalt ion. Its complex chemical structure demands 30 enzyme-catalyzed steps for synthesis. Deficiency of th...

Machine learning-based identification of wastewater treatment plant-specific microbial indicators using 16S rRNA gene sequencing.

Scientific reports
Effluent released from municipal wastewater treatment plants reflects the microbial communities responsible for degrading and removing contaminants within the plants. Monitoring this effluent offers essential insights into its environmental impacts, ...

Responses of Microbial Community to Heterogeneous Dissolved Organic Nitrogen Constituents in the Hyporheic Zones of Treated Sewage-Dominated Rivers.

Microbial ecology
The hyporheic zone (HZ) of treated sewage-dominated rivers serves as a critical biogeochemical hotspot for dissolved organic nitrogen (DON) transformation, yet the mechanisms linking DON chemodiversity to microbial community dynamics remain poorly re...

Microbiomics and machine learning-assisted approaches reveal amino acid patterns in high-temperature Daqu.

Food chemistry
Amino acids are crucial nitrogen sources in high-temperature Daqu (HTD), and they can significantly influence the quality of HTD. This study investigated amino acid patterns by analyzing fermentation parameters and microbial communities. Correlation ...

1,3-Thiazole nucleus as promising molecular platform against antimicrobial resistance: a recent overview in drug discovery.

European journal of medicinal chemistry
Antimicrobial resistance (AMR) has emerged as one of the foremost public health threats of the 21st century. The progressive decline in the efficacy of conventional antibiotics, combined with a scarcity of new drug classes approved in recent decades,...