AIMC Topic: Computational Biology

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DBP-GAPred: An intelligent method for prediction of DNA-binding proteins types by enhanced evolutionary profile features with ensemble learning.

Journal of bioinformatics and computational biology
DNA-binding proteins (DBPs) perform an influential role in diverse biological activities like DNA replication, slicing, repair, and transcription. Some DBPs are indispensable for understanding many types of human cancers (i.e. lung, breast, and liver...

The Trifecta of Single-Cell, Systems-Biology, and Machine-Learning Approaches.

Genes
Together, single-cell technologies and systems biology have been used to investigate previously unanswerable questions in biomedicine with unparalleled detail. Despite these advances, gaps in analytical capacity remain. Machine learning, which has re...

CT Image Analysis and Clinical Diagnosis of New Coronary Pneumonia Based on Improved Convolutional Neural Network.

Computational and mathematical methods in medicine
In this paper, based on the improved convolutional neural network, in-depth analysis of the CT image of the new coronary pneumonia, using the U-Net series of deep neural networks to semantically segment the CT image of the new coronary pneumonia, to ...

The Infectious Disease Ontology in the age of COVID-19.

Journal of biomedical semantics
BACKGROUND: Effective response to public health emergencies, such as we are now experiencing with COVID-19, requires data sharing across multiple disciplines and data systems. Ontologies offer a powerful data sharing tool, and this holds especially f...

Recent advances in drug repurposing using machine learning.

Current opinion in chemical biology
Drug repurposing aims to find new uses for already existing and approved drugs. We now provide a brief overview of recent developments in drug repurposing using machine learning alongside other computational approaches for comparison. We also highlig...

Prioritizing and characterizing functionally relevant genes across human tissues.

PLoS computational biology
Knowledge of genes that are critical to a tissue's function remains difficult to ascertain and presents a major bottleneck toward a mechanistic understanding of genotype-phenotype links. Here, we present the first machine learning model-FUGUE-combini...

Highly accurate protein structure prediction with AlphaFold.

Nature
Proteins are essential to life, and understanding their structure can facilitate a mechanistic understanding of their function. Through an enormous experimental effort, the structures of around 100,000 unique proteins have been determined, but this r...

Analysis of DNA Sequence Classification Using CNN and Hybrid Models.

Computational and mathematical methods in medicine
In a general computational context for biomedical data analysis, DNA sequence classification is a crucial challenge. Several machine learning techniques have used to complete this task in recent years successfully. Identification and classification o...

DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data.

Genome medicine
Multi-omics data are good resources for prognosis and survival prediction; however, these are difficult to integrate computationally. We introduce DeepProg, a novel ensemble framework of deep-learning and machine-learning approaches that robustly pre...

Transcriptome profiling by combined machine learning and statistical R analysis identifies TMEM236 as a potential novel diagnostic biomarker for colorectal cancer.

Scientific reports
Colorectal cancer (CRC) is a common cause of cancer-related deaths worldwide. The CRC mRNA gene expression dataset containing 644 CRC tumor and 51 normal samples from the cancer genome atlas (TCGA) was pre-processed to identify the significant differ...