AIMC Topic: Databases, Genetic

Clear Filters Showing 621 to 630 of 747 articles

RefRGim: an intelligent reference panel reconstruction method for genotype imputation with convolutional neural networks.

Briefings in bioinformatics
Genotype imputation is a statistical method for estimating missing genotypes from a denser haplotype reference panel. Existing methods usually performed well on common variants, but they may not be ideal for low-frequency and rare variants. Previous ...

XOmiVAE: an interpretable deep learning model for cancer classification using high-dimensional omics data.

Briefings in bioinformatics
The lack of explainability is one of the most prominent disadvantages of deep learning applications in omics. This 'black box' problem can undermine the credibility and limit the practical implementation of biomedical deep learning models. Here we pr...

AniAMPpred: artificial intelligence guided discovery of novel antimicrobial peptides in animal kingdom.

Briefings in bioinformatics
With advancements in genomics, there has been substantial reduction in the cost and time of genome sequencing and has resulted in lot of data in genome databases. Antimicrobial host defense proteins provide protection against invading microbes. But c...

Improved prediction of protein-protein interaction using a hybrid of functional-link Siamese neural network and gradient boosting machines.

Briefings in bioinformatics
In this paper, for accurate prediction of protein-protein interaction (PPI), a novel hybrid classifier is developed by combining the functional-link Siamese neural network (FSNN) with the light gradient boosting machine (LGBM) classifier. The hybrid ...

Integrative machine learning framework for the identification of cell-specific enhancers from the human genome.

Briefings in bioinformatics
Enhancers are deoxyribonucleic acid (DNA) fragments which when bound by transcription factors enhance the transcription of related genes. Due to its sporadic distribution and similar fractions, identification of enhancers from the human genome seems ...

The accurate prediction and characterization of cancerlectin by a combined machine learning and GO analysis.

Briefings in bioinformatics
Cancerlectins, lectins linked to tumor progression, have become the focus of cancer therapy research for their carbohydrate-binding specificity. However, the specific characterization for cancerlectins involved in tumor progression is still unclear. ...

A novel antibacterial peptide recognition algorithm based on BERT.

Briefings in bioinformatics
As the best substitute for antibiotics, antimicrobial peptides (AMPs) have important research significance. Due to the high cost and difficulty of experimental methods for identifying AMPs, more and more researches are focused on using computational ...

WEVar: a novel statistical learning framework for predicting noncoding regulatory variants.

Briefings in bioinformatics
Understanding the functional consequence of noncoding variants is of great interest. Though genome-wide association studies or quantitative trait locus analyses have identified variants associated with traits or molecular phenotypes, most of them are...

An artificial neural network model based on DNA damage response genes to predict outcomes of lower-grade glioma patients.

Briefings in bioinformatics
Although the prognosis of lower-grade glioma (LGG) patients is better than others, outcomes are highly heterogeneous. Isocitrate dehydrogenase (IDH) mutation and 1p/19q codeletion status can identify patient subsets with different prognosis. However,...

NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning.

Briefings in bioinformatics
Neuropeptides (NPs) are the most versatile neurotransmitters in the immune systems that regulate various central anxious hormones. An efficient and effective bioinformatics tool for rapid and accurate large-scale identification of NPs is critical in ...