AIMC Topic: Deep Learning

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Application of deep learning-based computer-aided detection system: detecting pneumothorax on chest radiograph after biopsy.

European radiology
OBJECTIVES: To retrospectively evaluate the diagnostic performance of a convolutional neural network (CNN) model in detecting pneumothorax on chest radiographs obtained after percutaneous transthoracic needle biopsy (PTNB) for pulmonary lesions.

FactorNet: A deep learning framework for predicting cell type specific transcription factor binding from nucleotide-resolution sequential data.

Methods (San Diego, Calif.)
Due to the large numbers of transcription factors (TFs) and cell types, querying binding profiles of all valid TF/cell type pairs is not experimentally feasible. To address this issue, we developed a convolutional-recurrent neural network model, call...

Bayesian QuickNAT: Model uncertainty in deep whole-brain segmentation for structure-wise quality control.

NeuroImage
We introduce Bayesian QuickNAT for the automated quality control of whole-brain segmentation on MRI T1 scans. Next to the Bayesian fully convolutional neural network, we also present inherent measures of segmentation uncertainty that allow for qualit...

Quality assurance of computer-aided detection and diagnosis in colonoscopy.

Gastrointestinal endoscopy
Recent breakthroughs in artificial intelligence (AI), specifically via its emerging sub-field "deep learning," have direct implications for computer-aided detection and diagnosis (CADe and/or CADx) for colonoscopy. AI is expected to have at least 2 m...

A deep learning approach to estimation of subject-level bias and variance in high angular resolution diffusion imaging.

Magnetic resonance imaging
The ability to evaluate empirical diffusion MRI acquisitions for quality and to correct the resulting imaging metrics allows for improved inference and increased replicability. Previous work has shown promise for estimation of bias and variance of ge...

Deep Learning for Automated Contouring of Primary Tumor Volumes by MRI for Nasopharyngeal Carcinoma.

Radiology
Background Nasopharyngeal carcinoma (NPC) may be cured with radiation therapy. Tumor proximity to critical structures demands accuracy in tumor delineation to avoid toxicities from radiation therapy; however, tumor target contouring for head and neck...

Quality and content analysis of fundus images using deep learning.

Computers in biology and medicine
Automatic retinal image analysis has remained an important topic of research in the last ten years. Various algorithms and methods have been developed for analysing retinal images. The majority of these methods use public retinal image databases for ...

Detection and characterization of MRI breast lesions using deep learning.

Diagnostic and interventional imaging
PURPOSE: The purpose of this study was to assess the potential of a deep learning model to discriminate between benign and malignant breast lesions using magnetic resonance imaging (MRI) and characterize different histological subtypes of breast lesi...

Deep learning for high-throughput quantification of oligodendrocyte ensheathment at single-cell resolution.

Communications biology
High-throughput quantification of oligodendrocyte myelination is a challenge that, if addressed, would facilitate the development of therapeutics to promote myelin protection and repair. Here, we established a high-throughput method to assess oligode...

Predicting drug-target interaction network using deep learning model.

Computational biology and chemistry
BACKGROUND: Traditional methods for drug discovery are time-consuming and expensive, so efforts are being made to repurpose existing drugs. To find new ways for drug repurposing, many computational approaches have been proposed to predict drug-target...