AIMC Topic: Phenotype

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Network biology and artificial intelligence drive the understanding of the multidrug resistance phenotype in cancer.

Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy
Globally with over 10 million deaths per year, cancer is the most transversal disease across countries, cultures, and ethnicities, affecting both developed and developing regions. Tumorigenesis is dynamically altered by distinct events and can be let...

Marker effects and heritability estimates using additive-dominance genomic architectures via artificial neural networks in Coffea canephora.

PloS one
Many methodologies are used to predict the genetic merit in animals and plants, but some of them require priori assumptions that may increase the complexity of the model. Artificial neural network (ANN) has advantage to not require priori assumptions...

Machine learning accurately predicts the multivariate performance phenotype from morphology in lizards.

PloS one
Completing the genotype-to-phenotype map requires rigorous measurement of the entire multivariate organismal phenotype. However, phenotyping on a large scale is not feasible for many kinds of traits, resulting in missing data that can also cause prob...

PhenoApt leverages clinical expertise to prioritize candidate genes via machine learning.

American journal of human genetics
In recent years, exome sequencing (ES) has shown great utility in the diagnoses of Mendelian disorders. However, after rigorous filtering, a typical ES analysis still involves the interpretation of hundreds of variants, which greatly hinders the rapi...

Insights into cell classification based on combination of multiple cellular mechanical phenotypes by using machine learning algorithm.

Journal of the mechanical behavior of biomedical materials
Although cellular elastic property (CEP, also known as cellular elastic modulus) has been frequently reported as a biomarker to distinguish some cancerous cells from their benign counterparts, it cannot be adopted as a universal hallmark to be applie...

Evidence for distinct neuro-metabolic phenotypes in humans.

NeuroImage
Advances in magnetic resonance imaging have shown how individual differences in the structure and function of the human brain relate to health and cognition. The relationship between individual differences and the levels of neuro-metabolites, however...

Unsupervised discovery of dynamic cell phenotypic states from transmitted light movies.

PLoS computational biology
Identification of cell phenotypic states within heterogeneous populations, along with elucidation of their switching dynamics, is a central challenge in modern biology. Conventional single-cell analysis methods typically provide only indirect, static...

Deep learning radiomics model related with genomics phenotypes for lymph node metastasis prediction in colorectal cancer.

Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology
BACKGROUND AND PURPOSE: The preoperative lymph node (LN) status is important for the treatment of colorectal cancer (CRC). Here, we established and validated a deep learning (DPL) model for predicting lymph node metastasis (LNM) in CRC.