AIMC Topic: Software

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DGaze: CNN-Based Gaze Prediction in Dynamic Scenes.

IEEE transactions on visualization and computer graphics
We conduct novel analyses of users' gaze behaviors in dynamic virtual scenes and, based on our analyses, we present a novel CNN-based model called DGaze for gaze prediction in HMD-based applications. We first collect 43 users' eye tracking data in 5 ...

Coding with transient trajectories in recurrent neural networks.

PLoS computational biology
Following a stimulus, the neural response typically strongly varies in time and across neurons before settling to a steady-state. While classical population coding theory disregards the temporal dimension, recent works have argued that trajectories o...

Machine learning meets pK .

F1000Research
We present a small molecule pK prediction tool entirely written in Python. It predicts the macroscopic pK value and is trained on a literature compilation of monoprotic compounds. Different machine learning models were tested and random forest perf...

DTranNER: biomedical named entity recognition with deep learning-based label-label transition model.

BMC bioinformatics
BACKGROUND: Biomedical named-entity recognition (BioNER) is widely modeled with conditional random fields (CRF) by regarding it as a sequence labeling problem. The CRF-based methods yield structured outputs of labels by imposing connectivity between ...

Assisted phase and step annotation for surgical videos.

International journal of computer assisted radiology and surgery
PURPOSE: Annotation of surgical videos is a time-consuming task which requires specific knowledge. In this paper, we present and evaluate a deep learning-based method that includes pre-annotation of the phases and steps in surgical videos and user as...

Mu-net: Multi-scale U-net for two-photon microscopy image denoising and restoration.

Neural networks : the official journal of the International Neural Network Society
Advances in two two-photon microscopy (2PM) have made three-dimensional (3D) neural imaging of deep cortical regions possible. However, 2PM often suffers from poor image quality because of various noise factors, including blur, white noise, and photo...

PiNN: A Python Library for Building Atomic Neural Networks of Molecules and Materials.

Journal of chemical information and modeling
Atomic neural networks (ANNs) constitute a class of machine learning methods for predicting potential energy surfaces and physicochemical properties of molecules and materials. Despite many successes, developing interpretable ANN architectures and im...

Medi-Care AI: Predicting medications from billing codes via robust recurrent neural networks.

Neural networks : the official journal of the International Neural Network Society
In this paper, we present an effective deep prediction framework based on robust recurrent neural networks (RNNs) to predict the likely therapeutic classes of medications a patient is taking, given a sequence of diagnostic billing codes in their reco...

Migrating from partial least squares discriminant analysis to artificial neural networks: a comparison of functionally equivalent visualisation and feature contribution tools using jupyter notebooks.

Metabolomics : Official journal of the Metabolomic Society
INTRODUCTION: Metabolomics data is commonly modelled multivariately using partial least squares discriminant analysis (PLS-DA). Its success is primarily due to ease of interpretation, through projection to latent structures, and transparent assessmen...